Browse Element(s) Details


OsAffx.4562.1.S1_at

Description tigr:9633.m03693
TID=OsAffx.4562.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3966010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39660OsAffx.4562.1.S1_at10/115+23199922..23201170hypothetical protein
LOC_Os05g39670Os.6752.1.S1_at9/115+23201427..23202535PRA1 family protein, expressed
LOC_Os05g39680OsAffx.27242.1.S1_x_at10/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39680Os.23700.1.A1_at6/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39690Os.9824.1.S2_at6/115+23214329..23217004Aldose reductase, putative, expressed
LOC_Os05g39700NANA5+23220401..23221663hypothetical protein
LOC_Os05g39710Os.56128.1.S1_at11/115+23224241..23224984expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4562.1.S1_at--846--3211Chr05:23200181..23200205 (25 bp)
CAAGGTGGTTGTTGGCTCCAAGCGC
LOC_Os05g39660
OsAffx.4562.1.S1_at--667--1351Chr05:23200208..23200232 (25 bp)
AGAGAGCCATCAAGAGCGTGTCCCT
LOC_Os05g39660
OsAffx.4562.1.S1_at--1145--1311Chr05:23200382..23200406 (25 bp)
AGAGGCGCCTCTTCGGACAACGCTT
LOC_Os05g39660
OsAffx.4562.1.S1_at--303--4251NONE
CCGGCCCCGTTCAGGATGAGAATTA
NONE
OsAffx.4562.1.S1_at--117--7571Chr05:23200931..23200955 (25 bp)
GGGCCGACCCAACAAATGTTCACAT
LOC_Os05g39660
OsAffx.4562.1.S1_at--712--2291Chr05:23200944..23200968 (25 bp)
AAATGTTCACATGGCCGTCACGGAC
LOC_Os05g39660
OsAffx.4562.1.S1_at--508--4491Chr05:23200957..23200981 (25 bp)
GCCGTCACGGACAGCTACATATGGA
LOC_Os05g39660
OsAffx.4562.1.S1_at--377--1231Chr05:23200984..23201008 (25 bp)
AGTTCCACGGTCCACCAGCAAAGAA
LOC_Os05g39660
OsAffx.4562.1.S1_at--743--5131Chr05:23201001..23201025 (25 bp)
GCAAAGAAGCGTTCATCCCAACAAA
LOC_Os05g39660
OsAffx.4562.1.S1_at--1009--671Chr05:23201069..23201093 (25 bp)
ATGACATGTGGACCCGGTGTTTACA
LOC_Os05g39660
OsAffx.4562.1.S1_at--758--7411Chr05:23201085..23201109 (25 bp)
GTGTTTACATTGTGCCCACCGTCAT
LOC_Os05g39660
Target Sequence 
CAAGGTGGTTGTTGGCTCCAAGCGCGGAGAGAGCCATCAAGAGCGTGTCCCTCAGCTTCCTCATCGCGGAGCCTTACCTG
CTGCACGCCGTCGCCCGCGCCGTCGACGACCTCCTCCTTGACGGCAGCAACAGCAGCCTGGAGAGCCTTGAGATGGACAT
GTGGACCGATCGGGTCGCTGCCGGCGCCGCGACCCTCGAACAGAGGCGCCTCTTCGGACAACGCTTCCAGTCACTCTTCG
ACGCTTACCCGGCCCCGTTCAGGATGAGAATTAGATTCGTTGACAAGTTATTCCTTACACAAAAAAGTCAAGGCCCAAGC
TTAGGAAAATTCAGGCCAGGCTGGGCCGGGCCGACCCAACAAATGTTCACATGGCCGTCACGGACAGCTACATATGGACC
AGTTCCACGGTCCACCAGCAAAGAAGCGTTCATCCCAACAAACCCGGGGCCTCATCAACAGAACATGAAGAAGAGGGGTC
TACCTATGACATGTGGACCCGGTGTTTACATTGTGCCCACCGTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4562.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis