Browse Element(s) Details


Os.9824.1.S2_at

Description gb:AK066733.1
DB_XREF= gi:32976751
TID=Os.9824.1
CNT=13
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9824 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033111K17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013074I15, full insert sequence.
FL= gb:AK102864.1 gb:AK066733.1 gb:AK059249.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g396906/11Aldose reductase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39660OsAffx.4562.1.S1_at10/115+23199922..23201170hypothetical protein
LOC_Os05g39670Os.6752.1.S1_at9/115+23201427..23202535PRA1 family protein, expressed
LOC_Os05g39680OsAffx.27242.1.S1_x_at10/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39680Os.23700.1.A1_at6/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39690Os.9824.1.S2_at6/115+23214329..23217004Aldose reductase, putative, expressed
LOC_Os05g39700NANA5+23220401..23221663hypothetical protein
LOC_Os05g39710Os.56128.1.S1_at11/115+23224241..23224984expressed protein
LOC_Os05g39720Os.50108.1.S1_at11/115+23227315..23230243DNA-binding protein WRKY1, putative, expressed
LOC_Os05g39730Os.17275.1.S1_at11/115+23234000..23236786Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9824.1.S2_at--93--1451Chr05:23216002..23216026 (25 bp)
AGAACCTTGCGCATGATCCAGTTGT
LOC_Os05g39690
Os.9824.1.S2_at--843--2751Chr05:23216152..23216176 (25 bp)
AAGACTCCAGGTCAAGTGCTCATCA
LOC_Os05g39690
Os.9824.1.S2_at--1038--2851Chr05:23216165..23216189 (25 bp)
AAGTGCTCATCAAGTGGGCTCTCCA
LOC_Os05g39690
Os.9824.1.S2_at--352--5691Chr05:23216278..23216302 (25 bp)
GACTTCCAGGTCTTGTGCGGCATCA
LOC_Os05g39690
Os.9824.1.S2_at--856--8071Chr05:23216935..23216959 (25 bp)
GGAGCTCTTCGTGAACAAGACCCAT
LOC_Os05g39690
Os.9824.1.S2_at--262--1811Chr05:23216954..23216978 (25 bp)
ACCCATGGGCCATACAAGAGTGCAT
LOC_Os05g39690
Os.9824.1.S2_at--396--6191Chr05:23216996..23217020 (25 bp)
GAGGACTAAGCTGCCATGTTTCACC
NONE
Os.9824.1.S2_at--685--6071Chr05:23217066..23217090 (25 bp)
GAGTTATGTGATGTTCTCCAAGCAC
NONE
Os.9824.1.S2_at--517--8671Chr05:23217091..23217115 (25 bp)
TGTGACGAAACCAGCTAACTCAGCA
NONE
Os.9824.1.S2_at--695--8671Chr05:23217154..23217178 (25 bp)
TGTGTGCTCTTCTTCAAGCTTTGTG
NONE
Os.9824.1.S2_at--254--7451Chr05:23217176..23217200 (25 bp)
GTGTAACCAGCTTCTCAGCACAAGA
NONE
Target Sequence 
AGAACCTTGCGCATGATCCAGTTGTCGAGAAGATAGCCAACAAGCTGAACAAGACTCCAGGTCAAGTGCTCATCAAGTGG
GCTCTCCAAAGGGGAACAAGCGTTATTCCAAAATCAACTAAAGATGAAAGGATTAAGGAGAATATGCAGGTGTTTGGATG
GGAGATCCCTGAAGAGGACTTCCAGGTCTTGTGCGGCATCAAAGATGAGAAGCGAGTCCTGACAGGAGAGGAGCTCTTCG
TGAACAAGACCCATGGGCCATACAAGAGTGCATCTGAGGTCTGGGATAACGAGGACTAAGCTGCCATGTTTCACCCAAAG
ATATGGCAAATAATGGTTATGATGTTGGTCATGCACGAAGGAGTTATGTGATGTTCTCCAAGCACTGTGACGAAACCAGC
TAACTCAGCACAAGATGTACTACTATGTGTAAAACTAGTNTTGTTCTATGTGTGCTCTTCTTCAAGCTTTGTGTAACCAG
CTTCTCAGCACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9824.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis