Browse Element(s) Details


Os.50108.1.S1_at

Description gb:AK119867.1
DB_XREF= gi:37989490
TID=Os.50108.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-179-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-179-A11, full insert sequence.
FL= gb:AK119867.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3972011/11DNA-binding protein WRKY1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39670Os.6752.1.S1_at9/115+23201427..23202535PRA1 family protein, expressed
LOC_Os05g39680OsAffx.27242.1.S1_x_at10/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39680Os.23700.1.A1_at6/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39690Os.9824.1.S2_at6/115+23214329..23217004Aldose reductase, putative, expressed
LOC_Os05g39700NANA5+23220401..23221663hypothetical protein
LOC_Os05g39710Os.56128.1.S1_at11/115+23224241..23224984expressed protein
LOC_Os05g39720Os.50108.1.S1_at11/115+23227315..23230243DNA-binding protein WRKY1, putative, expressed
LOC_Os05g39730Os.17275.1.S1_at11/115+23234000..23236786Protein of unknown function, DUF614 containing protein, expressed
LOC_Os05g39740OsAffx.22947.1.S1_x_at11/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.3.S1_x_at5/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.2.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.5.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50108.1.S1_at--815--7631Chr05:23227824..23227848 (25 bp)
GGGAGCGTCTTACTCTTACACGAGC
LOC_Os05g39720
Os.50108.1.S1_at--609--1511Chr05:23227789..23227813 (25 bp)
AGCAGCCGAACGACGCGGTGTACTA
LOC_Os05g39720
Os.50108.1.S1_at--514--7751Chr05:23227773..23227797 (25 bp)
GGTGTACTACGCGTCGAGAGCCAAG
LOC_Os05g39720
Os.50108.1.S1_at--1046--1931Chr05:23227732..23227756 (25 bp)
ACGGCATCATGTCGTTCTTTGAGCA
LOC_Os05g39720
Os.50108.1.S1_at--609--1671Chr05:23227708..23227732 (25 bp)
AGCCGCTGCTGTTTTGATCATCTAA
LOC_Os05g39720
Os.50108.1.S1_at--635--3051Chr05:23227685..23227709 (25 bp)
AATCGGGCCGTCAATTTGATCAGCA
LOC_Os05g39720
Os.50108.1.S1_at--1047--6091Chr05:23227624..23227648 (25 bp)
GAGTGAGTTAGCTTAGCTCCGGTAA
LOC_Os05g39720
Os.50108.1.S1_at--898--10791Chr05:23227588..23227612 (25 bp)
TTGTTTCATTTGTTTCGGAGGCCCG
LOC_Os05g39720
Os.50108.1.S1_at--874--5011Chr05:23227537..23227561 (25 bp)
GCAGGGTGACCTTCGTTTTAACGCG
LOC_Os05g39720
Os.50108.1.S1_at--971--10411Chr05:23227367..23227391 (25 bp)
TTATTCATATGTCCCCATTGTGGTA
LOC_Os05g39720
Os.50108.1.S1_at--566--2511Chr05:23227337..23227361 (25 bp)
AACATTTCGTTCTATGGCTTTGCTA
LOC_Os05g39720
Target Sequence 
GGGAGCGTCTTACTCTTACACGAGCCAGCAGCAGCAGCAGCCGAACGACGCGGTGTACTACGCGTCGAGAGCCAAGGATG
AGCCGAGAGACGACGGCATCATGTCGTTCTTTGAGCAGCCGCTGCTGTTTTGATCATCTAATCGGGCCGTCAATTTGATC
AGCATGCATGATCCATGGATGTTGTGTACATGTGTATGTGGAGTGAGTTAGCTTAGCTCCGGTAAGGTTTGTGACTTTGT
TTCATTTGTTTCGGAGGCCCGGGCCATGCAGCTGATGTCTGCAGAAAGCAGGGTGACCTTCGTTTTAACGCGTTGCAATT
GCACAGAGGGCGTATAGGGAGAACGAGAAAATAATTAAGATCAGTTTTTAGCTGCTTAACTTTTTTTTTTCAAATGAAAA
ATTTGTTGTAGTATGCAAATGTAAACTGTAAACACAATTTGGATATATTGTATTAAATTATTCATATGTCCCCATTGTGG
TAGATTTAACATTTCGTTCTATGGCTTTGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis