Browse Element(s) Details


OsAffx.27242.1.S1_x_at

Description tigr:9633.m03695
TID=OsAffx.27242.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3968010/11PX domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39620OsAffx.21171.3.S1_x_at4/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.5.S1_x_at3/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.21171.4.S1_x_at2/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39620OsAffx.22711.4.S1_at1/115+23179346..23185029retrotransposon protein, putative, unclassified
LOC_Os05g39630OsAffx.29284.1.S1_x_at1/115+23187528..23188130hypothetical protein
LOC_Os05g39640OsAffx.15029.1.S1_at11/115+23189008..23189486hypothetical protein
LOC_Os05g39650Os.27499.2.S1_a_at11/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_s_at4/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39650Os.23310.1.A1_x_at1/115+23190400..23193314phytanoyl-CoA dioxygenase, putative, expressed
LOC_Os05g39660OsAffx.4562.1.S1_at10/115+23199922..23201170hypothetical protein
LOC_Os05g39670Os.6752.1.S1_at9/115+23201427..23202535PRA1 family protein, expressed
LOC_Os05g39680OsAffx.27242.1.S1_x_at10/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39680Os.23700.1.A1_at6/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39690Os.9824.1.S2_at6/115+23214329..23217004Aldose reductase, putative, expressed
LOC_Os05g39700NANA5+23220401..23221663hypothetical protein
LOC_Os05g39710Os.56128.1.S1_at11/115+23224241..23224984expressed protein
LOC_Os05g39720Os.50108.1.S1_at11/115+23227315..23230243DNA-binding protein WRKY1, putative, expressed
LOC_Os05g39730Os.17275.1.S1_at11/115+23234000..23236786Protein of unknown function, DUF614 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007242biological_processintracellular signaling cascade
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27242.1.S1_x_at--805--2051Chr05:23212213..23212237 (25 bp)
ACTTGCTAGCGTTGGGTTTATTTCT
LOC_Os05g39680
OsAffx.27242.1.S1_x_at--1124--9431Chr05:23212259..23212283 (25 bp)
TCGGATCTCCTGTATGCTGCTCGAG
LOC_Os05g39680
OsAffx.27242.1.S1_x_at--1137--4751Chr05:23212274..23212298 (25 bp)
GCTGCTCGAGGTGTGCTGAAATCTT
LOC_Os05g39680
OsAffx.27242.1.S1_x_at--69--9251Chr05:23212330..23212354 (25 bp)
TCCTATTTGGAAGTCAGCAGCTGTT
LOC_Os05g39680
OsAffx.27242.1.S1_x_at--561--4871Chr05:23212362..23212386 (25 bp)
GCTTTCTTGGAACGTCAGCAAACTT
LOC_Os05g39680
OsAffx.27242.1.S1_x_at--788--1491NONE
AGCAAACTTGCGGTATCAGATCATT
NONE
OsAffx.27242.1.S1_x_at--797--3071Chr05:23212951..23212975 (25 bp)
AATCAGCCACTTCTTGCTAGTTTGT
LOC_Os05g39680
OsAffx.27242.1.S1_x_at--184--4871Chr05:23212966..23212990 (25 bp)
GCTAGTTTGTTGTCCTTTGTGGCAA
LOC_Os05g39680
OsAffx.27242.1.S1_x_at--434--431Chr05:23213444..23213468 (25 bp)
ATCTTGCGAGATATACTGGACTACA
LOC_Os05g39680
OsAffx.27242.1.S1_x_at--220--2931Chr05:23213476..23213500 (25 bp)
AAGGAAGTTCCTCCTGTTGAGGCCA
LOC_Os05g39680
OsAffx.27242.1.S1_x_at--525--8971Chr05:23213514..23213538 (25 bp)
TGAAACGTCACAGTTAGCCACACCG
LOC_Os05g39680
Target Sequence 
ACTTGCTAGCGTTGGGTTTATTTCTAGTGTGGGGGCTGGAGCTTCCTCGGATCTCCTGTATGCTGCTCGAGGTGTGCTGA
AATCTTCAGTGAATGCAGAAGCAGGACGGAAGAGATCTCCTATTTGGAAGTCAGCAGCTGTTTATAGTTGCTTTCTTGGA
ACGTCAGCAAACTTGCGGTATCAGATCATTGCTGGTTTAGTGGAGCATCGGCTAGGAGAGAGTCTAGCTACTAGCTACAA
TCAGCCACTTCTTGCTAGTTTGTTGTCCTTTGTGGCAAGGACAGTGAACTCATACTGGGGAACACAGCAATGGGTTGATC
TTGCGAGATATACTGGACTACAAAAAACCAAGGAAGTTCCTCCTGTTGAGGCCACAGCACCACCTGCTGAAACGTCACAG
TTAGCCACACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27242.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis