Browse Element(s) Details


Os.17275.1.S1_at

Description gb:AK102680.1
DB_XREF= gi:32987889
TID=Os.17275.1
CNT=11
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.17275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033102J02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033102J02, full insert sequence.
FL= gb:AK102680.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3973011/11Protein of unknown function, DUF614 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g39680OsAffx.27242.1.S1_x_at10/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39680Os.23700.1.A1_at6/115+23204757..23213649PX domain containing protein, expressed
LOC_Os05g39690Os.9824.1.S2_at6/115+23214329..23217004Aldose reductase, putative, expressed
LOC_Os05g39700NANA5+23220401..23221663hypothetical protein
LOC_Os05g39710Os.56128.1.S1_at11/115+23224241..23224984expressed protein
LOC_Os05g39720Os.50108.1.S1_at11/115+23227315..23230243DNA-binding protein WRKY1, putative, expressed
LOC_Os05g39730Os.17275.1.S1_at11/115+23234000..23236786Protein of unknown function, DUF614 containing protein, expressed
LOC_Os05g39740OsAffx.22947.1.S1_x_at11/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.3.S1_x_at5/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.2.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g39740OsAffx.22947.5.S1_x_at3/115+23242670..23249030retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0007568biological_processaging
GO:0009621biological_processresponse to pathogenic fungi
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17275.1.S1_at--616--1251Chr05:23234557..23234581 (25 bp)
AGATTGCTTCCAGTGGTTGTGCTGC
LOC_Os05g39730
Os.17275.1.S1_at--774--1531Chr05:23234438..23234462 (25 bp)
AGCATGTAATGACCCCATTGTCGCG
LOC_Os05g39730
Os.17275.1.S1_at--377--6231Chr05:23234409..23234433 (25 bp)
GATGGTTTGCCTCTTTTTAGGTCAA
LOC_Os05g39730
Os.17275.1.S1_at--77--1031Chr05:23234391..23234415 (25 bp)
AGGTCAAATCCAGGTTCGCCATACA
LOC_Os05g39730
Os.17275.1.S1_at--161--9331Chr05:23234376..23234400 (25 bp)
TCGCCATACAGGAGCAGCACTGCTA
LOC_Os05g39730
Os.17275.1.S1_at--123--1991Chr05:23234358..23234382 (25 bp)
ACTGCTAGTCCATCGATCTTCATTA
LOC_Os05g39730
Os.17275.1.S1_at--382--6111Chr05:23234329..23234353 (25 bp)
GAGTCCATCAGCTCCACGGAGATCA
LOC_Os05g39730
Os.17275.1.S1_at--558--3551Chr05:23234240..23234264 (25 bp)
CATCTGTTCTCCACAGAGACGGTGA
LOC_Os05g39730
Os.17275.1.S1_at--778--5751Chr05:23234223..23234247 (25 bp)
GACGGTGAGCCCGAATTGTAGTACC
LOC_Os05g39730
Os.17275.1.S1_at--1146--5371Chr05:23234186..23234210 (25 bp)
GAAGCATTAGTTATCCTGAGTCTAT
LOC_Os05g39730
Os.17275.1.S1_at--915--5691Chr05:23234071..23234095 (25 bp)
GACTAGACCATCATTTCAGTTCAGT
LOC_Os05g39730
Target Sequence 
AGATTGCTTCCAGTGGTTGTGCTGCTCCTCATGCTCCCTTGCCCAGGAGGTGAGAACTGCTGATTATTATGATATTGCTG
AAGATAGGTCATATACAGAGCAGATTACTGCGAGAAGCCAGCATGTAATGACCCCATTGTCGCGNGAAGATGGTTTGCCT
CTTTTTAGGTCAAATCCAGGTTCGCCATACAGGAGCAGCACTGCTAGTCCATCGATCTTCATTATGGAGAGTCCATCAGC
TCCACGGAGATCACCTGGACCTAGCCCTCTGGGGGGTTCGCCGACAATGGGCGACAGGACAATGAAGGCGCCTACTCCAT
CTGTTCTCCACAGAGACGGTGAGCCCGAATTGTAGTACCGGGAAATGCAATGAAGCATTAGTTATCCTGAGTCTATTTTG
TATATTTGATGTAAAGAAAACTACCATACACCTTTTTTTTTTCATCTGCAGCTTCNATGCAACTGCCATTGCTTATGAAA
TGTATAGACTAGACCATCATTTCAGTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17275.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis