Browse Element(s) Details


OsAffx.4641.1.S1_at

Description tigr:9633.m04390
TID=OsAffx.4641.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4669011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g46640OsAffx.27342.1.S1_at11/115+26916366..26917351hypothetical protein
LOC_Os05g46650NANA5+26918379..26918819hypothetical protein
LOC_Os05g46660NANA5+26922489..26924411transposon protein, putative, Mutator sub-class
LOC_Os05g46670NANA5+26927289..26927726transposon protein, putative, unclassified
LOC_Os05g46680OsAffx.15130.1.S1_at11/115+26935282..26935895hypothetical protein
LOC_Os05g46690OsAffx.4641.1.S1_at11/115+26941703..26943787hypothetical protein
LOC_Os05g46700NANA5+26949660..26951087hypothetical protein
LOC_Os05g46710Os.56107.1.S1_at9/115+26953752..26955642expressed protein
LOC_Os05g46720Os.4058.1.S1_at10/115+26960087..26965297phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os05g46730OsAffx.4643.1.S1_at11/115+26968340..26970191hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4641.1.S1_at--1026--411Chr05:26942274..26942298 (25 bp)
ATCATCTCAAGGCTGCCACTCGATG
LOC_Os05g46690
OsAffx.4641.1.S1_at--278--3731Chr05:26942234..26942258 (25 bp)
CTACATGTTGTACCTGTTGGTGGTT
LOC_Os05g46690
OsAffx.4641.1.S1_at--853--7831Chr05:26942213..26942237 (25 bp)
GGTTAACCCGGATATACTAATGTCG
LOC_Os05g46690
OsAffx.4641.1.S1_at--633--9771Chr05:26942196..26942220 (25 bp)
TAATGTCGGGCACCAGAGCGAACAT
LOC_Os05g46690
OsAffx.4641.1.S1_at--82--8911Chr05:26942129..26942153 (25 bp)
TGAGAAGCCACCGTCTGATGAAAGT
LOC_Os05g46690
OsAffx.4641.1.S1_at--545--2871Chr05:26942081..26942105 (25 bp)
AAGGGCCCAAAGCTCGAATGTCGAC
LOC_Os05g46690
OsAffx.4641.1.S1_at--864--5791Chr05:26942059..26942083 (25 bp)
GACGCTGCTGCAACCGAAGAACTGA
LOC_Os05g46690
OsAffx.4641.1.S1_at--808--571Chr05:26942024..26942048 (25 bp)
ATCCAAGCTTGCGAGCCAGTTGTTG
LOC_Os05g46690
OsAffx.4641.1.S1_at--582--6331Chr05:26941926..26941950 (25 bp)
GATGCAGAGGGTACTTGCACGCCAA
LOC_Os05g46690
OsAffx.4641.1.S1_at--1103--7531Chr05:26941865..26941889 (25 bp)
GTGGCTCCTCTTGTGGTACATGGGC
LOC_Os05g46690
OsAffx.4641.1.S1_at--710--6031Chr05:26941814..26941838 (25 bp)
GAGATCAGATTTCAGGAGTCACGTA
LOC_Os05g46690
Target Sequence 
ATCATCTCAAGGCTGCCACTCGATGCAGAGAGATCTCCAACTACATGTTGTACCTGTTGGTGGTTAACCCGGATATACTA
ATGTCGGGCACCAGAGCGAACATCCTCTCCAATACATGCAAGGAGCTTCGTAGCATGTTTGAGGATGAGAAGCCACCGTC
TGATGAAAGTGACCTTACAAGGGAGATACACAGAAGGGCCCAAAGCTCGAATGTCGACGCTGCTGCAACCGAAGAACTGA
TTCCCCGTGCATCCAAGCTTGCGAGCCAGTTGTTGGCCATGGATGGCGACAAGAGGTGGAAGGTGATGCAAGGTGTGTGG
GTGGAGATGTTGTGCTTCTCCGCGAGCAGATGCAGAGGGTACTTGCACGCCAAGAGCTTAGGCCAGGGAGGGGAGTACCT
CTCCTACGTGTGGCTCCTCTTGTGGTACATGGGCTTGGAGAGCGTGGCAGAGAGGCAGCAGAGATCAGATTTCAGGAGTC
ACGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis