Browse Element(s) Details


OsAffx.4651.1.S1_at

Description tigr:9633.m04518
TID=OsAffx.4651.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4840011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g48360Os.37910.1.S1_at11/115+27640132..27644189MAC/Perforin domain containing protein, expressed
LOC_Os05g48370Os.15774.1.S1_at11/115+27646303..27648140expressed protein
LOC_Os05g48380Os.50544.1.S1_at11/115+27650625..27655048ubiquitin-conjugating enzyme E2, putative, expressed
LOC_Os05g48390Os.15185.1.S1_s_at11/115+27656755..27664453Ubiquitin-conjugating enzyme family protein, expressed
LOC_Os05g48400OsAffx.4651.1.S1_at11/115+27666072..27666717hypothetical protein
LOC_Os05g48410Os.8883.1.S1_at11/115+27672841..2767585750S ribosomal protein L21, mitochondrial precursor, putative, expressed
LOC_Os05g48416Os.9873.1.S1_at11/115+27676281..27680377expressed protein
LOC_Os05g48422Os.49122.1.S1_at11/115+27681587..27683386ribosomal protein, putative, expressed
LOC_Os05g48430NANA5+27689003..27689218hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4651.1.S1_at--1015--8731Chr05:27666661..27666685 (25 bp)
TGTAATCAAGCCCAAACTCTCTGAC
LOC_Os05g48400
OsAffx.4651.1.S1_at--985--1991Chr05:27666646..27666670 (25 bp)
ACTCTCTGACAGAAAGCTCGATCAG
LOC_Os05g48400
OsAffx.4651.1.S1_at--54--5571Chr05:27666636..27666659 (24 bp)
GAAAGCTCGATCAGAAATACACAGA
LOC_Os05g48400
OsAffx.4651.1.S1_at--798--2831Chr05:27666225..27666249 (25 bp)
AAGTGAGGAGCTGACCAACCAAAAG
LOC_Os05g48400
OsAffx.4651.1.S1_at--845--5851Chr05:27666213..27666237 (25 bp)
GACCAACCAAAAGGCAGATGCAGAT
LOC_Os05g48400
OsAffx.4651.1.S1_at--518--31Chr05:27666182..27666206 (25 bp)
ATTGTGCTGCACTTTGGACGGCGAA
LOC_Os05g48400
OsAffx.4651.1.S1_at--1068--2031Chr05:27666172..27666196 (25 bp)
ACTTTGGACGGCGAATTCAGCAGCC
LOC_Os05g48400
OsAffx.4651.1.S1_at--1117--9651Chr05:27666156..27666180 (25 bp)
TCAGCAGCCGTGTGGATGGATATTC
LOC_Os05g48400
OsAffx.4651.1.S1_at--672--6511Chr05:27666138..27666162 (25 bp)
GATATTCTGCATGCGATCCCGGGAT
LOC_Os05g48400
OsAffx.4651.1.S1_at--72--611Chr05:27666128..27666152 (25 bp)
ATGCGATCCCGGGATCCTGTAAAGG
LOC_Os05g48400
OsAffx.4651.1.S1_at--104--7991Chr05:27666102..27666126 (25 bp)
GGATGGATGCACTTTCATGGGTATG
LOC_Os05g48400
Target Sequence 
TGTAATCAAGCCCAAACTCTCTGACAGAAAGCTCGATCAGAAATACACAGAAAGCTGGGGAAGTGAGGAGCTGACCAACC
AAAAGGCAGATGCAGATGATGAGATTGTGCTGCACTTTGGACGGCGAATTCAGCAGCCGTGTGGATGGATATTCTGCATG
CGATCCCGGGATCCTGTAAAGGGGGATGGATGCACTTTCATGGGTATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis