Browse Element(s) Details


OsAffx.4720.1.S1_x_at

Description tigr:9634.m00365
TID=OsAffx.4720.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0449011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g04440OsAffx.27454.1.S1_at11/116+1898595..1899626hypothetical protein
LOC_Os06g04450Os.7031.1.S1_at11/116+1899883..1907931SNARE-interacting protein KEULE, putative, expressed
LOC_Os06g04460Os.13555.1.S1_at11/116+1908682..1912018hypersensitive-induced reaction protein 4, putative, expressed
LOC_Os06g04470Os.22672.1.S1_at11/116+1913175..1917037expressed protein
LOC_Os06g04480Os.56019.1.S1_at11/116+1921430..1922594expressed protein
LOC_Os06g04490OsAffx.4720.1.S1_x_at11/116+1923874..1924299hypothetical protein
LOC_Os06g04500NANA6+1926467..1927636ER-derived vesicles protein ERV14, putative
LOC_Os06g04510Os.21318.1.S1_at11/116+1930302..1935378Enolase 1, putative, expressed
LOC_Os06g04520Os.52134.1.S1_at11/116+1936858..1947666expressed protein
LOC_Os06g04530Os.14723.1.S1_at10/116+1948450..1952326ATP-dependent Clp protease proteolytic subunit 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4720.1.S1_x_at--717--751Chr06:1923904..1923928 (25 bp)
ATGTACATGATCGTCCTCGGCCACG
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--518--5991Chr06:1923958..1923982 (25 bp)
GAGACGAAGCGGATGTGGGCGACAT
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--363--791Chr06:1923970..1923994 (25 bp)
ATGTGGGCGACATCGCAGGACGGCT
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--428--9351Chr06:1923982..1924006 (25 bp)
TCGCAGGACGGCTGGGTGATCACCT
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--1025--951Chr06:1923986..1924010 (25 bp)
AGGACGGCTGGGTGATCACCTACGA
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--996--8811Chr06:1923998..1924022 (25 bp)
TGATCACCTACGACGCGGAGACCCT
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--380--4711Chr06:1924074..1924098 (25 bp)
GCGGCGCAAGATGGTCGTCGTCCTG
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--126--4691Chr06:1924123..1924147 (25 bp)
GCGGACGGTTCGAGCTGCACGCTCT
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--544--6711Chr06:1924130..1924154 (25 bp)
GTTCGAGCTGCACGCTCTCCGGCGA
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--911--7671Chr06:1924171..1924195 (25 bp)
GGGTTCACGGTGGTCATCATCGAGC
LOC_Os06g04490
OsAffx.4720.1.S1_x_at--195--1091Chr06:1924202..1924226 (25 bp)
AGGGCTCCGCGCTGTGGTACTGCCA
LOC_Os06g04490
Target Sequence 
ATGTACATGATCGTCCTCGGCCACGGCGACGTCCTCCACGGCGGCGGCGGCGGCGAGACGAAGCGGATGTGGGCGACATC
GCAGGACGGCTGGGTGATCACCTACGACGCGGAGACCCTCGCCACCGCCCTGTGCAGGTGCAGCAGCAACGGCGGCGGCG
GCGGCGCCGGGCGGCGCAAGATGGTCGTCGTCCTGCCGTCGTTCGGGCGGACGCCGCCGGCGGACGGTTCGAGCTGCACG
CTCTCCGGCGATCCCACCGACGGCGGCGGGTTCACGGTGGTCATCATCGAGCCGCCGGAGGGCTCCGCGCTGTGGTACTG
CCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4720.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis