Browse Element(s) Details


OsAffx.4749.1.S1_x_at

Description tigr:9634.m00658
TID=OsAffx.4749.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g0726011/11wall-associated kinase, putative
LOC_Os06g073301/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g07210Os.4222.1.S1_at11/116+3448701..3453748Ribonucleoside-diphosphate reductase large subunit, putative, expressed
LOC_Os06g07220Os.4223.1.S1_s_at11/116+3454801..3455812transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g07230Os.9247.2.S1_x_at11/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07230Os.9247.1.S1_at9/116+3459182..3464374Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os06g07240NANA6+3467971..3468919expressed protein
LOC_Os06g07250Os.22995.1.S1_at1/116+3469796..3474964Protein GOS9, putative, expressed
LOC_Os06g07260OsAffx.4749.1.S1_x_at11/116+3476114..3476404wall-associated kinase, putative
LOC_Os06g07260OsAffx.4749.1.S1_at11/116+3476114..3476404wall-associated kinase, putative
LOC_Os06g07270OsAffx.27487.1.S1_at10/116+3482626..3483957hypothetical protein
LOC_Os06g07270OsAffx.16226.1.S1_at4/116+3482626..3483957hypothetical protein
LOC_Os06g07280OsAffx.27488.1.S1_at11/116+3488967..3489803Tubulin beta-1 chain, putative
LOC_Os06g07290NANA6+3493534..3499016retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4749.1.S1_x_at--177--971Chr06:3476347..3476371 (25 bp)
AGGAGCCTTTCCTTGAGCTTCTTGT
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--883--8912Chr06:3476334..3476358 (25 bp)
TGAGCTTCTTGTGTGCCATGGAGGA
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--843--7891Chr06:3476243..3476267 (25 bp)
GGTTGCCAACCTTGCAAGCCGGTGC
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--1034--10671Chr06:3476241..3476265 (25 bp)
TTGCCAACCTTGCAAGCCGGTGCCT
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--803--4391Chr06:3476239..3476263 (25 bp)
GCCAACCTTGCAAGCCGGTGCCTGG
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--1042--2631Chr06:3476236..3476260 (25 bp)
AACCTTGCAAGCCGGTGCCTGGAGA
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--51--1311Chr06:3476214..3476238 (25 bp)
AGATGATCGGCAATAACCGCCCGTC
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--1067--4531Chr06:3476196..3476220 (25 bp)
GCCCGTCGATGAGAGATGTCGCTGA
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--388--7231Chr06:3476179..3476203 (25 bp)
GTCGCTGACAAATTTGGCCGGCTGA
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--100--9351Chr06:3476178..3476202 (25 bp)
TCGCTGACAAATTTGGCCGGCTGAG
LOC_Os06g07260
OsAffx.4749.1.S1_x_at--611--4751Chr06:3476176..3476200 (25 bp)
GCTGACAAATTTGGCCGGCTGAGGA
LOC_Os06g07260
Target Sequence 
AGGAGCCTTTCCTTGAGCTTCTTGTGTGCCATGGAGGAGGGAAGACTCATGGACATTATAGGTCATCACATTCAAACTGA
TGAGAATGCTGGGGTGCTCGAGGAGGTTGCCAACCTTGCAAGCCGGTGCCTGGAGATGATCGGCAATAACCGCCCGTCGA
TGAGAGATGTCGCTGACAAATTTGGCCGGCTGAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4749.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis