Browse Element(s) Details


OsAffx.4803.1.S1_at

Description tigr:9634.m01158
TID=OsAffx.4803.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=trehalose-phosphatase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1184010/11trehalose-phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g11800Os.15957.1.S1_at11/116+6249719..6252708Annexin-like protein RJ4, putative, expressed
LOC_Os06g11810Os.55513.1.S1_at11/116+6252708..6253495dehydration stress-induced protein, putative, expressed
LOC_Os06g11820OsAffx.29576.4.S1_x_at11/116+6254756..6255753hypothetical protein
LOC_Os06g11830Os.20614.3.S1_x_at11/116+6257433..6260360hAT family dimerisation domain containing protein, expressed
LOC_Os06g11840OsAffx.4803.1.S1_at10/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.1206.1.S1_x_at2/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11840OsAffx.9230.2.S1_x_at1/116+6276594..6280855trehalose-phosphatase family protein, expressed
LOC_Os06g11850OsAffx.27573.1.S1_at11/116+6294653..6298081hypothetical protein
LOC_Os06g11860OsAffx.10845.1.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed
LOC_Os06g11860OsAffx.10845.2.S1_s_at11/116+6303590..6305635AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005992biological_processtrehalose biosynthesis
GO:0004805molecular_functiontrehalose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4803.1.S1_at--683--5211Chr06:6278802..6278826 (25 bp)
GAATTCTTGTCTCCAAGTGTGCCAA
LOC_Os06g11840
OsAffx.4803.1.S1_at--995--7271Chr06:6278784..6278808 (25 bp)
GTGCCAAGGAGACTGACGCCTCGTA
LOC_Os06g11840
OsAffx.4803.1.S1_at--950--951NONE
AGGACCCAGCAGAGAAGTACACCAA
NONE
OsAffx.4803.1.S1_at--1127--1893Chr07:9429223..9429247 (25 bp)
ACGTGTTCGTGACGATGCTCCTGAC
NONE
OsAffx.4803.1.S1_at--430--3792Chr05:28943765..28943789 (25 bp)
CTCGTGCTGGCGCTACATGTGGTTA
NONE
OsAffx.4803.1.S1_at--407--3512Chr05:28943780..28943804 (25 bp)
CATGTGGTTAGATGCGTGCTCGCCA
NONE
OsAffx.4803.1.S1_at--318--8031Chr06:6276719..6276743 (25 bp)
GGAGTTCCTTGTTCGATTGGTGCAG
LOC_Os06g11840
OsAffx.4803.1.S1_at--1--3471Chr06:6276697..6276721 (25 bp)
CAGTGGAAGCTTCGGCGATCATCGT
LOC_Os06g11840
OsAffx.4803.1.S1_at--249--1651Chr06:6276671..6276695 (25 bp)
AGCGATGCGCCCGAGGGTTTAATTA
LOC_Os06g11840
OsAffx.4803.1.S1_at--209--151Chr06:6276650..6276674 (25 bp)
ATTAGTACACTGACGACGGATCATA
LOC_Os06g11840
OsAffx.4803.1.S1_at--321--331Chr06:6276624..6276648 (25 bp)
ATACTATATGACAGTCTTCCCTGCT
LOC_Os06g11840
Target Sequence 
GAATTCTTGTCTCCAAGTGTGCCAAGGAGACTGACGCCTCGTACTCTCTCCAGGACCCAGCAGAGAAGTACACCAACGCC
GGGGCGCACGTGTTCGTGACGATGCTCCTGACCGTGGTGTTCACGGCAGCTGTGGCGTTGGCTCTTGTCAACGCCGTCAA
CTCGCATGACTTCGCAGCACACCTCGCCGGCGTGGACTGCCGCATGGGGCTAGCTGGTCCAGTACGATGCCCAGCCTCGG
GCTTCGTGGAGCTCCTCGTGCTGGCGCTACATGTGGTTAGATGCGTGCTCGCCATCTTAGATCGCCTGCATGCCTGCCTA
ATGTCGCCCTCGCTACAGCTTTCGATTGCATCTCCATGTCATGGAGTTCCTTGTTCGATTGGTGCAGTGGAAGCTTCGGC
GATCATCGTCAGCGATGCGCCCGAGGGTTTAATTAGTACACTGACGACGGATCATATATACTATATGACAGTCTTCCCTG
CT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4803.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis