Browse Element(s) Details


OsAffx.4854.1.S1_at

Description tigr:9634.m01692
TID=OsAffx.4854.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to polygalacturonase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1681011/11Polygalacturonase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g16760Os.27435.1.S1_x_at4/116+9708411..9709587hypothetical protein
LOC_Os06g16770OsAffx.4851.1.S1_x_at11/116+9711602..9711993expressed protein
LOC_Os06g16780OsAffx.26306.1.S1_s_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16780OsAffx.26306.2.S1_at11/116+9713062..9713694hypothetical protein
LOC_Os06g16790OsAffx.27677.1.S1_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16790OsAffx.27677.1.S1_s_at11/116+9714215..9723860NB-ARC domain containing protein, expressed
LOC_Os06g16800OsAffx.28610.4.S1_s_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.4.S1_x_at11/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.2.S1_x_at5/116+9728463..9729124hypothetical protein
LOC_Os06g16800OsAffx.28610.3.S1_at2/116+9728463..9729124hypothetical protein
LOC_Os06g16810OsAffx.4854.1.S1_at11/116+9733901..9734545Polygalacturonase precursor, putative
LOC_Os06g16820OsAffx.27678.1.S1_at11/116+9742064..9742879hypothetical protein
LOC_Os06g16830NANA6+9743691..9744196retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g16840OsAffx.30536.1.S1_x_at1/116+9749163..9752141transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g16850Os.45977.1.S1_at1/116+9755316..9758917retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4854.1.S1_at--1127--1252Chr06:9734420..9734444 (25 bp)
AGATTTCGTCTAGCTCCAGAGGATT
LOC_Os06g16810
OsAffx.4854.1.S1_at--676--7151Chr06:9734413..9734437 (25 bp)
GTCTAGCTCCAGAGGATTTGGACCA
LOC_Os06g16810
OsAffx.4854.1.S1_at--596--6511Chr06:9734399..9734423 (25 bp)
GATTTGGACCAAAACGATGGAGAAT
LOC_Os06g16810
OsAffx.4854.1.S1_at--273--8071Chr06:9734381..9734405 (25 bp)
GGAGAATTTGTAGGCGCTGCACTTC
LOC_Os06g16810
OsAffx.4854.1.S1_at--798--8732Chr12:7411281..7411602 (25 bp)
TGTCAGGGTATCAGGCTATCAGCAT
NONE
OsAffx.4854.1.S1_at--145--7871Chr06:9734344..9734368 (25 bp)
GGTATCAGGCTATCAGCATGATGGG
LOC_Os06g16810
OsAffx.4854.1.S1_at--1064--7651Chr06:9734321..9734345 (25 bp)
GGGATCACCCTGAAAAACAGCCAGG
LOC_Os06g16810
OsAffx.4854.1.S1_at--353--2991Chr06:9734186..9734210 (25 bp)
AATGTTCATATCATGGAGGACTCCA
LOC_Os06g16810
OsAffx.4854.1.S1_at--972--3711Chr06:9733977..9734001 (25 bp)
CTACGGATGTGCGTCTAAGAGCAGA
LOC_Os06g16810
OsAffx.4854.1.S1_at--582--2991Chr06:9733944..9733968 (25 bp)
AATGTAGCACATATGGGTCCCATTT
LOC_Os06g16810
OsAffx.4854.1.S1_at--879--5111Chr06:9733938..9733962 (25 bp)
GCACATATGGGTCCCATTTGTTAAA
LOC_Os06g16810
Target Sequence 
AGATTTCGTCTAGCTCCAGAGGATTTGGACCAAAACGATGGAGAATTTGTAGGCGCTGCACTTCGAGGATTGTCAGGGTA
TCAGGCTATCAGCATGATGGGGATCACCCTGAAAAACAGCCAGGAAAGCCACCTGACGTTCACCAGGTGCTCACACGTCA
AGGCCAACTACATGAGGATAACCTCGCCGGAGGACAGCCCGGAGACCACTGGAGTTCACGTCGTCAGCTCGCGAAATGTT
CATATCATGGAGGACTCCATCTCCACATGTCATGATTGTGTCTCGATTGTAGGCAATTCTACGGATGTGCGTCTAAGAGC
AGAGGAGGAAAAATGTAGCACATATGGGTCCCATTTGTTAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4854.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis