Browse Element(s) Details


OsAffx.4941.1.S1_at

Description tigr:9634.m02570
TID=OsAffx.4941.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2598011/11hypothetical protein
LOC_Os07g161203/11retrotransposon protein, putative, unclassified
LOC_Os11g171302/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g141202/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g034502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g199601/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g25950OsAffx.15616.1.S1_at11/116+15188243..15196493expressed protein
LOC_Os06g25950Os.55104.1.S1_at10/116+15188243..15196493expressed protein
LOC_Os06g25960Os.46610.1.A1_x_at1/116+15197859..15199277hypothetical protein
LOC_Os06g25970NANA6+15206796..15207686retrotransposon protein, putative, unclassified
LOC_Os06g25980OsAffx.4941.1.S1_at11/116+15213558..15214163hypothetical protein
LOC_Os06g25990OsAffx.20408.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25990OsAffx.13774.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g25990OsAffx.9772.1.S1_at1/116+15217546..15222170retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g26000OsAffx.19815.1.S1_at1/116+15223784..15225120hypothetical protein
LOC_Os06g26010OsAffx.22699.1.S1_x_at1/116+15226360..15231638retrotransposon protein, putative, unclassified
LOC_Os06g26020OsAffx.15617.1.S1_x_at11/116+15233920..15234969hypothetical protein
LOC_Os06g26020OsAffx.15617.1.S1_at11/116+15233920..15234969hypothetical protein
LOC_Os06g26030Os.46334.1.S1_x_at1/116+15235366..15238130hypothetical protein
LOC_Os06g26030Os.49645.1.S1_at1/116+15235366..15238130hypothetical protein
LOC_Os06g26030Os.46334.1.S1_at1/116+15235366..15238130hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4941.1.S1_at--644--5734Chr06:15213686..15213710 (25 bp)
GACTGGCCCAGTAATCACCGGGAGT
LOC_Os06g25980
OsAffx.4941.1.S1_at--430--8871Chr06:15213710..15213734 (25 bp)
TGAGAACGACGTGGATACGACCCCG
LOC_Os06g25980
OsAffx.4941.1.S1_at--968--991Chr06:15213751..15213775 (25 bp)
AGGATCCTCCCGCAAGAGCGAAGAA
LOC_Os06g25980
OsAffx.4941.1.S1_at--283--10211Chr06:15213893..15213917 (25 bp)
TATTCACAAGACTAAAGGGCACGAC
LOC_Os06g25980
OsAffx.4941.1.S1_at--40--2894Chr11:9495823..9495847 (25 bp)
AAGGGCACGACTTGCAAGCTTGCTC
LOC_Os11g17130
OsAffx.4941.1.S1_at--461--5691Chr06:15213915..15213939 (25 bp)
GACTTGCAAGCTTGCTCAGTTTTTC
LOC_Os06g25980
OsAffx.4941.1.S1_at--545--3032Chr06:15213956..15213980 (25 bp)
AATCCGTGCCTGCAAGGAACGCGGA
LOC_Os06g25980
OsAffx.4941.1.S1_at--913--8171Chr06:15213971..15213995 (25 bp)
GGAACGCGGAATTCAACGTGCTTCT
LOC_Os06g25980
OsAffx.4941.1.S1_at--179--2591Chr06:15213985..15214009 (25 bp)
AACGTGCTTCTCCTACTCGTGATGT
LOC_Os06g25980
OsAffx.4941.1.S1_at--308--9914Chr11:11465716..11465739 (24 bp)
TACTCGTGATGTTCATTGTCCCATT
LOC_Os11g19960
OsAffx.4941.1.S1_at--269--1411Chr06:15214027..15214051 (25 bp)
AGACAAGGACACACGACCTCTCGAG
LOC_Os06g25980
Target Sequence 
GACTGGCCCAGTAATCACCGGGAGTGAGAACGACGTGGATACGACCCCGGTCGACTCCATGTCGGAGGATCCTCCCGCAA
GAGCGAAGAACGGAACGTCGACAACGTCTGCGCCCGAGAAGGATTCTAACGCGGCCAGTTCTTGTCTTTTCGACAAGAAT
CACGAGCCGACGAGGACAACTTCCGAGGCAACAAGGACCTGGTGTCCTATTCACAAGACTAAAGGGCACGACTTGCAAGC
TTGCTCAGTTTTTCTCGACGTACAAGCTGAAATCCGTGCCTGCAAGGAACGCGGAATTCAACGTGCTTCTCCTACTCGTG
ATGTTCATTGTCCCATTCACAAGACAAGGACACACGACCTCTCGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis