Browse Element(s) Details


OsAffx.4988.1.S1_at

Description tigr:9634.m03137
TID=OsAffx.4988.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to BT005298 At3g61950
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3345010/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33430NANA6+19466522..19472679retrotransposon protein, putative, unclassified
LOC_Os06g33440OsAffx.19542.3.S1_x_at7/116+19479341..19480863retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g33450OsAffx.4988.1.S1_at10/116+19487393..19493211Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33450OsAffx.2630.1.S1_x_at1/116+19487393..19493211Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os06g33460OsAffx.4989.1.S1_at11/116+19494981..19495397hypothetical protein
LOC_Os06g33470OsAffx.4990.1.S1_at11/116+19499408..19502109expressed protein
LOC_Os06g33470OsAffx.24962.1.S1_at1/116+19499408..19502109expressed protein
LOC_Os06g33480Os.35524.1.S2_at1/116+19502410..19505419CAPIP1, putative
LOC_Os06g33490OsAffx.4991.1.S1_at11/116+19507721..19510237CAPIP1, putative
LOC_Os06g33499NANA6+19511072..19511723NA
LOC_Os06g33510OsAffx.4992.1.S1_at11/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_x_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33510Os.54774.1.S1_at2/116+19512647..19514137retrotransposon, putative, centromere-specific
LOC_Os06g33520OsAffx.27916.1.S1_at11/116+19515633..19523705DEAD box RNA helicase, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4988.1.S1_at--968--1611Chr06:19491414..19491438 (25 bp)
AGCTGTCGGCGTACGCCAGCAGGCA
LOC_Os06g33450
OsAffx.4988.1.S1_at--1058--1071Chr06:19491561..19491585 (25 bp)
AGGGCCGATCGCTGGAGATTCTTCA
LOC_Os06g33450
OsAffx.4988.1.S1_at--142--6391Chr06:19491567..19491591 (25 bp)
GATCGCTGGAGATTCTTCACGCCAA
LOC_Os06g33450
OsAffx.4988.1.S1_at--1106--4711Chr06:19491571..19491595 (25 bp)
GCTGGAGATTCTTCACGCCAAGATC
LOC_Os06g33450
OsAffx.4988.1.S1_at--446--6571Chr06:19491577..19491601 (25 bp)
GATTCTTCACGCCAAGATCAGCACC
LOC_Os06g33450
OsAffx.4988.1.S1_at--156--2811Chr06:19491590..19491614 (25 bp)
AAGATCAGCACCGTCGATGACACCG
LOC_Os06g33450
OsAffx.4988.1.S1_at--202--7091Chr06:19491617..19491637 (21 bp)
GTCAACTCCTTCACTGTCAAGTATA
LOC_Os06g33450
OsAffx.4988.1.S1_at--821--3331NONE
CACTGTCAAGTATATCTTTGGGCAG
NONE
OsAffx.4988.1.S1_at--524--9551Chr06:19493135..19493159 (25 bp)
TCTTTGGGCAGATTGGAATTGAGTG
LOC_Os06g33450
OsAffx.4988.1.S1_at--68--5211Chr06:19493150..19493174 (25 bp)
GAATTGAGTGCGAGCTCAGCGCTGA
LOC_Os06g33450
OsAffx.4988.1.S1_at--563--1131Chr06:19493156..19493180 (25 bp)
AGTGCGAGCTCAGCGCTGAAGAGTT
LOC_Os06g33450
Target Sequence 
AGCTGTCGGCGTACGCCAGCAGGCAGGCGCTGGGCGGCGGCCTCCTCCTCCCCGACGTGAAGGTGGAGTTCGCCGGCGCG
AACCTGGTGCTGAAGACGGTGTCGCAGCGGTCGCCGGGGCAGGCGGTGAAGATCATCGCCGCCCTGGAGGGCCGATCGCT
GGAGATTCTTCACGCCAAGATCAGCACCGTCGATGACACCGCCGTCAACTCCTTCACTGTCAAGTATATCTTTGGGCAGA
TTGGAATTGAGTGCGAGCTCAGCGCTGAAGAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4988.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis