Browse Element(s) Details


OsAffx.5031.3.S1_x_at

Description gb:NM_196635.1
DB_XREF= gi:37534629
TID=OsAffx.5031.3
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0019M20.7), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g2964011/11hypothetical protein
LOC_Os10g308007/11hypothetical protein
LOC_Os06g367501/11hypothetical protein
LOC_Os05g024201/11expressed protein
LOC_Os02g206091/11
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g29610OsAffx.18449.1.S1_at11/1110+15062649..15063410hypothetical protein
LOC_Os10g29620Os.12663.1.S1_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29620Os.12663.1.S1_x_at11/1110+15073206..15076459Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os10g29630OsAffx.18450.1.S1_at6/1110+15077883..15079071hypothetical protein
LOC_Os10g29640OsAffx.5031.3.S1_x_at11/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.1.S1_x_at5/1110+15081116..15081928hypothetical protein
LOC_Os10g29640OsAffx.5031.2.S1_x_at4/1110+15081116..15081928hypothetical protein
LOC_Os10g29650Os.51357.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_x_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.46786.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29650Os.23790.1.S1_at11/1110+15084802..15094069retrotransposon protein, putative, unclassified, expressed
LOC_Os10g29660Os.57360.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29660Os.9135.1.S1_at11/1110+15095437..15098038TATA-box binding protein 1, putative, expressed
LOC_Os10g29670Os.53080.1.S1_at10/1110+15098924..15102234expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5031.3.S1_x_at--414--1575Chr07:29250919..29250943 (25 bp)
AGCTCTTTGCCCAACACCAAAAATT
NONE
OsAffx.5031.3.S1_x_at--556--554Chr07:29250965..29250989 (25 bp)
ATCCAGGTCCAATCTCTTATTTGCT
NONE
OsAffx.5031.3.S1_x_at--9--6533Chr07:29250995..29251019 (25 bp)
GATTTGCAATCACGTGGATGTTCTT
NONE
OsAffx.5031.3.S1_x_at--1024--7972Chr10:15712222..15712246 (25 bp)
GGATGTTCTTTGCTGATCGTACGAT
LOC_Os10g30800
OsAffx.5031.3.S1_x_at--739--452Chr10:15712199..15712223 (25 bp)
ATCGTTGGCCCTTCTGTTCGAGTTG
LOC_Os10g30800
OsAffx.5031.3.S1_x_at--213--1891Chr10:15081543..15081567 (25 bp)
ACGATAGCCACCACGCCGATGACAA
LOC_Os10g29640
OsAffx.5031.3.S1_x_at--498--1315Chr07:29251201..29251225 (25 bp)
AGATGGACTACACCATGGACCAGCT
NONE
OsAffx.5031.3.S1_x_at--250--9453Chr05:7885105..7885129 (25 bp)
TCTGGAACGACATCGCAGCGGCGGA
NONE
OsAffx.5031.3.S1_x_at--278--8192Chr10:15712027..15712051 (25 bp)
GGAAGCCGACACAAGCTACGACGCG
LOC_Os10g30800
OsAffx.5031.3.S1_x_at--1113--8311Chr10:15712495..15712519 (25 bp)
ATGGAGCTGACGTGTGGGTCCCACA
NONE
OsAffx.5031.3.S1_x_at--1000--5012Chr11:10292368..10292387 (20 bp)
GCAGTGGCATGGGTCCAATTTCAAA
NONE
Target Sequence 
AGCTCTTTGCCCAACACCAAAAATTAAATCCCACCACCGCCAAGAAATCCAGGTCCAATCTCTTATTTGCTTTGATGATT
TGCAATCACGTGGATGTTCTTTGCTGATCGTACGATCGTTGGCCCTTCTGTTCGAGTTGGCCCACGACGACGATAGCCAC
CACGCCGATGACAACCACGACGATGACGAGGGCGGCGCTGCAAGAAAGCAGCAGCTGCTGCGCGCCGGCGAGCCAGCTGC
AGATGGACTACACCATGGACCAGCTCTGGAACGACATCGCAGCGGCGGAAGCCGACACAAGCTACGACGCGACGGCGGTG
GTGATGGCCTCGCCGCCATCGCCGGTCTGGGAATTCCGTGGCGGCGTTCGTGGCCCTCGCCGCCGTCATTGGCCGGCTGC
TGCTGCCGCCGCCGCCGCCGGTCACCTGCTGCTGTTGTTCGCCGGAGAGAGATGGGGAAGGGAGAAGAGAGGGGATGGAG
GAAGAGGATGGAGCTGACGTGTGGGTCCCACATTAGAGTGACGGCGATGGATGAAAAATGCGACGGCAGTGGCATGGGTC
CAATTTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5031.3.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis