Browse Element(s) Details


OsAffx.5038.1.S1_at

Description tigr:9634.m03608
TID=OsAffx.5038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3784011/11resistance protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g37810OsAffx.15805.1.S1_at11/116+22374264..22374920resistance protein, putative
LOC_Os06g37820OsAffx.15806.1.S1_at11/116+22375669..22386249Leucine Rich Repeat family protein
LOC_Os06g37830OsAffx.30016.1.S1_at1/116+22387370..22389896transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g37840OsAffx.5038.1.S1_at11/116+22395865..22397671resistance protein, putative, expressed
LOC_Os06g37850Os.26886.2.S1_s_at4/116+22404668..22406765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g37850Os.26886.6.S1_s_at3/116+22404668..22406765transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g37860Os.26886.1.S1_x_at3/116+22415506..22418759transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os06g37860Os.26886.3.S1_x_at1/116+22415506..22418759transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5038.1.S1_at--1126--2191Chr06:22396974..22396998 (25 bp)
ACAACTTCAGATGCCGTGCCTGGGT
LOC_Os06g37840
OsAffx.5038.1.S1_at--969--351Chr06:22396933..22396957 (25 bp)
ATCAATCCCCATGAGTTGGTCAGGA
LOC_Os06g37840
OsAffx.5038.1.S1_at--761--651Chr06:22396851..22396875 (25 bp)
ATGCACTTTCGTGGTTTTCTCTAAA
LOC_Os06g37840
OsAffx.5038.1.S1_at--252--6071Chr06:22396765..22396789 (25 bp)
GAGTTCTTGCGGCATGTCGACACAC
LOC_Os06g37840
OsAffx.5038.1.S1_at--415--5371Chr06:22396720..22396744 (25 bp)
GAAGACCTATCGACCATGGTGCAGT
LOC_Os06g37840
OsAffx.5038.1.S1_at--341--851Chr06:22396659..22396683 (25 bp)
ATGGAAGTCGTGTCCTTGTGTCAAC
LOC_Os06g37840
OsAffx.5038.1.S1_at--46--7451Chr06:22396642..22396666 (25 bp)
GTGTCAACGCGCCATCATGAAATCG
LOC_Os06g37840
OsAffx.5038.1.S1_at--718--671Chr06:22396626..22396650 (25 bp)
ATGAAATCGCAAGCCTGTGCACGGG
LOC_Os06g37840
OsAffx.5038.1.S1_at--539--5411Chr06:22396601..22396625 (25 bp)
GAAGCCTCACCGAGTATTGGAGCTC
LOC_Os06g37840
OsAffx.5038.1.S1_at--1073--8071Chr06:22396583..22396607 (25 bp)
GGAGCTCCAGAGGATCTCAATTCAT
LOC_Os06g37840
OsAffx.5038.1.S1_at--790--3451Chr06:22396558..22396582 (25 bp)
CAGTCTATCTGCATCTTTTTCAAAG
LOC_Os06g37840
Target Sequence 
ACAACTTCAGATGCCGTGCCTGGGTCAAGGTGGCGCATCCCATCAATCCCCATGAGTTGGTCAGGAGCTTGGTGGTTCAG
TTTTATGCAAACTCTTGCCAACAACAGCTACCTGCTGCTACAGATGCACTTTCGTGGTTTTCTCTAAAATATAAAAAACA
AAGAGATGCCCTGTCGTCGTCGGAAACGTCGACGGGAGAACTAGTCAAGGAGTTCTTGCGGCATGTCGACACACACCGGT
ACCTCATCATCCTGGAAGACCTATCGACCATGGTGCAGTGGGATGCCATCTGGCCCTACCTGCGGGGAGGCAAGAATGGA
AGTCGTGTCCTTGTGTCAACGCGCCATCATGAAATCGCAAGCCTGTGCACGGGGAAGCCTCACCGAGTATTGGAGCTCCA
GAGGATCTCAATTCATCAGTCTATCTGCATCTTTTTCAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis