Browse Element(s) Details


OsAffx.5106.1.S1_at

Description tigr:9634.m04326
TID=OsAffx.5106.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4467011/11hypothetical protein
LOC_Os03g315402/11hypothetical protein
LOC_Os09g365402/11retrotransposon protein, putative, unclassified
LOC_Os02g381502/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44610Os.8437.1.S1_at11/116+26936183..26940027plant integral membrane protein TIGR01569 containing protein, expressed
LOC_Os06g44620Os.8020.1.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44620Os.8020.2.S1_at11/116+26942172..269488924-coumarate-CoA ligase 2, putative, expressed
LOC_Os06g44630OsAffx.12125.2.S1_at4/116+26951629..26952601hypothetical protein
LOC_Os06g44630OsAffx.5580.1.S1_at1/116+26951629..26952601hypothetical protein
LOC_Os06g44640Os.6293.1.S1_at3/116+26953367..26954288hypothetical protein
LOC_Os06g44650OsAffx.12125.2.S1_at5/116+26955805..26956210hypothetical protein
LOC_Os06g44660Os.20322.1.S1_at11/116+26956544..26957614Fasciclin-like arabinogalactan protein 10 precursor, putative, expressed
LOC_Os06g44670OsAffx.5106.1.S1_at11/116+26959707..26960371hypothetical protein
LOC_Os06g44680OsAffx.28104.1.S1_at11/116+26971932..26972545hypothetical protein
LOC_Os06g44690NANA6+26977694..26981024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g44700NANA6+26982446..26982774hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5106.1.S1_at--935--3971Chr06:26960302..26960326 (25 bp)
CGGTGGCTCGGCGAAGAGAGCGAAG
LOC_Os06g44670
OsAffx.5106.1.S1_at--497--5791Chr06:26960285..26960309 (25 bp)
GAGCGAAGGTGGCAGTTCGGCGAGC
LOC_Os06g44670
OsAffx.5106.1.S1_at--75--10671Chr06:26960127..26960151 (25 bp)
TTCCGCATCCACAGCTGACAGGGCG
LOC_Os06g44670
OsAffx.5106.1.S1_at--412--4131Chr06:26960124..26960148 (25 bp)
CGCATCCACAGCTGACAGGGCGAAG
LOC_Os06g44670
OsAffx.5106.1.S1_at--595--3531Chr06:26960122..26960146 (25 bp)
CATCCACAGCTGACAGGGCGAAGGG
LOC_Os06g44670
OsAffx.5106.1.S1_at--24--97916Chr10:13713331..13713351 (21 bp)
TAAGGGTGCTTTTGATTTGTACTAC
NONE
OsAffx.5106.1.S1_at--291--28915Chr10:13713331..13713352 (22 bp)
AAGGGTGCTTTTGATTTGTACTACA
NONE
OsAffx.5106.1.S1_at--552--2691Chr06:26959747..26959771 (25 bp)
AAGCAGCTGTAGCTTTTGGGCTCTT
LOC_Os06g44670
OsAffx.5106.1.S1_at--761--1512Chr07:23409092..23409111 (20 bp)
AGCAGCTGTAGCTTTTGGGCTCTTT
NONE
OsAffx.5106.1.S1_at--436--5071Chr06:26959745..26959769 (25 bp)
GCAGCTGTAGCTTTTGGGCTCTTTG
LOC_Os06g44670
OsAffx.5106.1.S1_at--776--1611Chr06:26959743..26959767 (25 bp)
AGCTGTAGCTTTTGGGCTCTTTGGT
LOC_Os06g44670
Target Sequence 
CGGTGGCTCGGCGAAGAGAGCGAAGGTGGCAGTTCGGCGAGCAGGAGGACAAGCGGCGGGGACGAGCGACGGCGAGGAGG
AGCGGCGGCGGCGGTTCGGCGAGGAGGAGGACGCGCAGCGGGGTGGAGCCGCGGCGAGGAGGAGCGCCGCCGTCGGCCAC
CTCACCTCCTTCGTCTTCCGCATCCACAGCTGACAGGGCGAAGGGGTGGCGGCGCCGGGAGGAGGAGGCAGCGGTGGGTA
ATTTTTTTCCCCCAAAAGCAGGTGAAAGCAGGGGGTAAGGGTGCTTTTGATTTGTACTACACCAAAAGCTGGCTTTTGAC
AAAAGCAGCTGTAGCTTTTGGGCTCTTTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5106.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis