Browse Element(s) Details


OsAffx.5165.1.S1_at

Description tigr:9634.m04999
TID=OsAffx.5165.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=tRNA delta(2)-isopentenylpyrophosphate transferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g5135011/11tRNA isopentenyltransferase 9, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g51310Os.18590.1.S1_a_at11/116+31068078..31076380PINHEAD protein, putative, expressed
LOC_Os06g51320Os.21805.1.S1_s_at11/116+31081748..31082643Gibberellin regulated protein, expressed
LOC_Os06g51330OsAffx.5164.1.S1_at1/116+31082617..31092279BNR/Asp-box repeat family protein, expressed
LOC_Os06g51340OsAffx.29536.5.S1_x_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51340OsAffx.28971.1.S1_at1/116+31096292..31098021retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g51350OsAffx.5165.1.S1_at11/116+31099115..31101230tRNA isopentenyltransferase 9, putative, expressed
LOC_Os06g51360Os.7625.1.A1_s_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51360OsAffx.28211.1.S1_at11/116+31104381..31106964LysM domain containing protein, expressed
LOC_Os06g51370OsAffx.28212.1.S1_at11/116+31108239..31110246Serine carboxypeptidase II precursor, putative
LOC_Os06g51380Os.38358.1.S1_x_at7/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.38358.1.S1_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.10848.1.A1_x_at6/116+31117749..31120975root hairless 1, putative, expressed
LOC_Os06g51380Os.27044.1.A1_at1/116+31117749..31120975root hairless 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008033biological_processtRNA processing
GO:0009691biological_processcytokinin biosynthesis
GO:0004811molecular_functiontRNA isopentenyltransferase activity
GO:0005524molecular_functionATP binding
GO:0009824molecular_functionadenylate dimethylallyltransferase activity
GO:0016765molecular_functiontransferase activity, transferring alkyl or aryl (other than methyl) groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5165.1.S1_at--327--5631Chr06:31100763..31100787 (25 bp)
GACACAGGTGGCCTACTCTCTGAAG
LOC_Os06g51350
OsAffx.5165.1.S1_at--369--2091Chr06:31100803..31100827 (25 bp)
ACATCGGCTTGAGTCCTGGCATGAA
LOC_Os06g51350
OsAffx.5165.1.S1_at--271--4431Chr06:31100859..31100883 (25 bp)
GCCATGGAGTACTTGCTTCAGTGTA
LOC_Os06g51350
OsAffx.5165.1.S1_at--470--3231Chr06:31100910..31100934 (25 bp)
CAAGAGTTCTTGGAGTTCCTGACCA
LOC_Os06g51350
OsAffx.5165.1.S1_at--568--2811Chr06:31100934..31100958 (25 bp)
AAGTTTCAGACTGCCTCCAGGAACT
LOC_Os06g51350
OsAffx.5165.1.S1_at--1085--6191Chr06:31100966..31100990 (25 bp)
GAGGCAGATGACATGGTTCCGCAAC
LOC_Os06g51350
OsAffx.5165.1.S1_at--256--10471Chr06:31100999..31101023 (25 bp)
TTACCAGTGGGTTGATGCCTCGCAG
LOC_Os06g51350
OsAffx.5165.1.S1_at--306--5811Chr06:31101030..31101054 (25 bp)
GACGCCATTGCGCAGTTTATCTGTG
LOC_Os06g51350
OsAffx.5165.1.S1_at--1073--8671Chr06:31101051..31101075 (25 bp)
TGTGATGCTTACCATGACCGTGCTG
LOC_Os06g51350
OsAffx.5165.1.S1_at--113--3211Chr06:31101076..31101100 (25 bp)
CAAGGCTGGTTCCTGATTCACTGGA
LOC_Os06g51350
OsAffx.5165.1.S1_at--25--7411Chr06:31101133..31101157 (25 bp)
GTGATCTCAAGACCTACCGTTCTGA
LOC_Os06g51350
Target Sequence 
GACACAGGTGGCCTACTCTCTGAAGCCTCCTGGCTCCTCGACATCGGCTTGAGTCCTGGCATGAACTCGGCTACCTGCGC
AATCGGCTACAGGCAAGCCATGGAGTACTTGCTTCAGTGTAGGCACAACGGAGGCAGCAGCTCCCCACAAGAGTTCTTGG
AGTTCCTGACCAAGTTTCAGACTGCCTCCAGGAACTTCTCAAAGAGGCAGATGACATGGTTCCGCAACGAGAAGATTTAC
CAGTGGGTTGATGCCTCGCAGCCTTTCGACGCCATTGCGCAGTTTATCTGTGATGCTTACCATGACCGTGCTGCAAGGCT
GGTTCCTGATTCACTGGAAATGAAGAGGGAGAGTTGCAGGCACGAGAGCCGTGATCTCAAGACCTACCGTTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis