Browse Element(s) Details


OsAffx.5169.1.S1_at

Description tigr:9635.m00008
TID=OsAffx.5169.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0108010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01030Os.56213.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01030Os.27758.1.S1_at11/117+15819..19701glycosyl transferase, group 1 family protein, expressed
LOC_Os07g01040NANA7+25339..28172retrotransposon protein, putative, unclassified
LOC_Os07g01050NANA7+29174..32035retrotransposon protein, putative, unclassified
LOC_Os07g01060Os.4950.2.S1_a_at11/117+34439..40588expressed protein
LOC_Os07g01070Os.53798.1.S1_at11/117+40956..42852Peptide transporter PTR2, putative, expressed
LOC_Os07g01080OsAffx.5169.1.S1_at10/117+43843..44453hypothetical protein
LOC_Os07g01090Os.47446.1.S1_at10/117+47086..51511proline transporter, putative, expressed
LOC_Os07g01100Os.5996.1.S1_at11/117+55162..56516expressed protein
LOC_Os07g01110OsAffx.5170.1.S1_at11/117+57119..58949Multicopper oxidase family protein, expressed
LOC_Os07g01120OsAffx.28218.1.S1_at11/117+68389..69190hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5169.1.S1_at--622--8631Chr07:44399..44423 (25 bp)
TGGGTTGCAGAGAAAGATGTCCTTG
LOC_Os07g01080
OsAffx.5169.1.S1_at--185--1431Chr07:44389..44413 (25 bp)
AGAAAGATGTCCTTGATCTCAACAT
LOC_Os07g01080
OsAffx.5169.1.S1_at--226--9531NONE
TCTCAACATCATCAGCAGGAATGCT
NONE
OsAffx.5169.1.S1_at--20--951Chr07:44129..44381 (25 bp)
AGGAATGCTGTACCTCTCCCTGAGC
LOC_Os07g01080
OsAffx.5169.1.S1_at--678--5891Chr07:44108..44132 (25 bp)
GAGCAGGACCGCCTTGTTCCCCTTG
LOC_Os07g01080
OsAffx.5169.1.S1_at--269--10791Chr07:44095..44119 (25 bp)
TTGTTCCCCTTGCTGCAATTGTAGA
LOC_Os07g01080
OsAffx.5169.1.S1_at--772--10711Chr07:44086..44110 (25 bp)
TTGCTGCAATTGTAGAGTCTCCATC
LOC_Os07g01080
OsAffx.5169.1.S1_at--592--10811Chr07:44077..44101 (25 bp)
TTGTAGAGTCTCCATCCAATTCCAG
LOC_Os07g01080
OsAffx.5169.1.S1_at--878--3531Chr07:44065..44089 (25 bp)
CATCCAATTCCAGCACGAGTGACTT
LOC_Os07g01080
OsAffx.5169.1.S1_at--363--6671Chr07:43984..44049 (25 bp)
GTTGCAGGTGTACTTGCGGACCCAA
LOC_Os07g01080
OsAffx.5169.1.S1_at--311--9031Chr07:43970..43994 (25 bp)
TGCGGACCCAACGAGCCTGGAAGAT
LOC_Os07g01080
Target Sequence 
TGGGTTGCAGAGAAAGATGTCCTTGATCTCAACATCATCAGCAGGAATGCTGTACCTCTCCCTGAGCAGGACCGCCTTGT
TCCCCTTGCTGCAATTGTAGAGTCTCCATCCAATTCCAGCACGAGTGACTTGAGCGTGGGAAAGGTGTTGCAGGTGTACT
TGCGGACCCAACGAGCCTGGAAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5169.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis