Browse Element(s) Details


OsAffx.5249.1.S1_at

Description tigr:9635.m00743
TID=OsAffx.5249.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0794010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g07910OsAffx.16146.1.S1_x_at11/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.10374.1.S1_at2/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07910Os.49900.1.S1_at1/117+3968690..3973785potassium channel AKT5, putative, expressed
LOC_Os07g07920Os.9544.1.A1_at11/117+3974486..3976004Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07930Os.7242.1.S1_at11/117+3978511..3979560Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os07g07940OsAffx.5249.1.S1_at10/117+3986913..3988823hypothetical protein
LOC_Os07g07950Os.23227.1.S1_at11/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07950Os.23612.1.S1_at2/117+3989964..3995100Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2, putative, expressed
LOC_Os07g07960NANA7+4002845..4003279hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5249.1.S1_at--128--7731NONE
GGTGGCGTCAAGCACATCAGGCATT
NONE
OsAffx.5249.1.S1_at--451--411Chr07:3988566..3988590 (25 bp)
ATCAGGCATTCATGCGTTGCCCAAG
LOC_Os07g07940
OsAffx.5249.1.S1_at--314--611Chr07:3988577..3988601 (25 bp)
ATGCGTTGCCCAAGGGCCTCTGATG
LOC_Os07g07940
OsAffx.5249.1.S1_at--818--9471Chr07:3988595..3988619 (25 bp)
TCTGATGCCCACCTGTGGCTTAATC
LOC_Os07g07940
OsAffx.5249.1.S1_at--1077--7531Chr07:3988609..3988633 (25 bp)
GTGGCTTAATCCAATCTTATCAGCA
LOC_Os07g07940
OsAffx.5249.1.S1_at--1082--3211Chr07:3988634..3988658 (25 bp)
CAAGATCATGGCACATTGGCACCAG
LOC_Os07g07940
OsAffx.5249.1.S1_at--1039--11Chr07:3988648..3988672 (25 bp)
ATTGGCACCAGATTGTCAGATTGAT
LOC_Os07g07940
OsAffx.5249.1.S1_at--350--9651Chr07:3988694..3988718 (25 bp)
TCAGTTAGTATTTAGCACAGTGCCT
LOC_Os07g07940
OsAffx.5249.1.S1_at--152--10451Chr07:3988705..3988729 (25 bp)
TTAGCACAGTGCCTGACGGTTTCAT
LOC_Os07g07940
OsAffx.5249.1.S1_at--488--5751Chr07:3988719..3988743 (25 bp)
GACGGTTTCATGTTGATCAGAGGAA
LOC_Os07g07940
OsAffx.5249.1.S1_at--248--10751Chr07:3988756..3988780 (25 bp)
TTGAGTTCAGGGTAATAGCAGCAGA
LOC_Os07g07940
Target Sequence 
GGTGGCGTCAAGCACATCAGGCATTCATGCGTTGCCCAAGGGCCTCTGATGCCCACCTGTGGCTTAATCCAATCTTATCA
GCACAAGATCATGGCACATTGGCACCAGATTGTCAGATTGATGAACATCACAATGCAAATGTTTCAGTTAGTATTTAGCA
CAGTGCCTGACGGTTTCATGTTGATCAGAGGAAACAAGATGGGAGTTGAGTTCAGGGTAATAGCAGCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5249.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis