Browse Element(s) Details


OsAffx.5275.3.S1_at

Description tigr:9635.m00938
TID=OsAffx.5275.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0974011/11No apical meristem protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09710OsAffx.5270.1.S1_at11/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09710Os.48723.1.A1_at8/117+5163173..5165015F-box domain containing protein, expressed
LOC_Os07g09720Os.5949.1.S1_at11/117+5177408..5181052Phosphoglucomutase/phosphomannomutase, C-terminal domain containing protein, expressed
LOC_Os07g09730NANA7+5185068..5186255hypothetical protein
LOC_Os07g09740OsAffx.5275.3.S1_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09740OsAffx.5275.1.S1_s_at11/117+5188105..5190099No apical meristem protein
LOC_Os07g09750OsAffx.5272.1.S1_at10/117+5190408..5193220hypothetical protein
LOC_Os07g09750Os.24100.1.A1_at1/117+5190408..5193220hypothetical protein
LOC_Os07g09760OsAffx.8923.1.S1_at6/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09760Os.51887.1.S1_x_at1/117+5193996..5199218retrotransposon protein, putative, unclassified
LOC_Os07g09770NANA7+5200617..5205276retrotransposon protein, putative, unclassified
LOC_Os07g09780OsAffx.16179.1.S1_at10/117+5206577..5207660hypothetical protein
LOC_Os07g09790Os.18194.1.S1_at11/117+5209080..5213380hypothetical protein
LOC_Os07g09790OsAffx.28368.1.S1_at10/117+5209080..5213380hypothetical protein
LOC_Os07g09800Os.53087.1.S1_at10/117+5214329..5215314expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5275.3.S1_at--618--9271Chr07:5189764..5189788 (25 bp)
TCCGGCATGGTGGATGATTCCCTTC
LOC_Os07g09740
OsAffx.5275.3.S1_at--424--4251Chr07:5189765..5189789 (25 bp)
CCGGCATGGTGGATGATTCCCTTCC
LOC_Os07g09740
OsAffx.5275.3.S1_at--242--8271Chr07:5189767..5189791 (25 bp)
GGCATGGTGGATGATTCCCTTCCCG
LOC_Os07g09740
OsAffx.5275.3.S1_at--318--791Chr07:5189770..5189794 (25 bp)
ATGGTGGATGATTCCCTTCCCGGGT
LOC_Os07g09740
OsAffx.5275.3.S1_at--185--8611Chr07:5189771..5189795 (25 bp)
TGGTGGATGATTCCCTTCCCGGGTA
LOC_Os07g09740
OsAffx.5275.3.S1_at--188--7491Chr07:5189773..5189797 (25 bp)
GTGGATGATTCCCTTCCCGGGTACT
LOC_Os07g09740
OsAffx.5275.3.S1_at--365--8551Chr07:5189774..5189798 (25 bp)
TGGATGATTCCCTTCCCGGGTACTA
LOC_Os07g09740
OsAffx.5275.3.S1_at--199--7971Chr07:5189775..5189799 (25 bp)
GGATGATTCCCTTCCCGGGTACTAT
LOC_Os07g09740
OsAffx.5275.3.S1_at--94--6271Chr07:5189776..5189800 (25 bp)
GATGATTCCCTTCCCGGGTACTATG
LOC_Os07g09740
OsAffx.5275.3.S1_at--213--3771Chr07:5189850..5189874 (25 bp)
CTCTCCCTCAAAAGGCGGCCATGAC
LOC_Os07g09740
OsAffx.5275.3.S1_at--8--2671Chr07:5189879..5189903 (25 bp)
AAGCCGAAGTCGACGCCAGTGGTGG
LOC_Os07g09740
Target Sequence 
TCCGGCATGGTGGATGATTCCCTTCCCGGGTACTATGAGGCTGAGCTGAAGGTTCCGCTTGAGTACGCCGCGCGCAATCC
GGTCGACTCTCCCTCAAAAGGCGGCCATGACCATGAAGCCGAAGTCGACGCCAGTGGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5275.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis