Browse Element(s) Details


OsAffx.5313.1.S1_at

Description tigr:9635.m01311
TID=OsAffx.5313.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g132903/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g13270Os.10804.1.S1_at11/117+7619801..7624987SNF7 family protein, expressed
LOC_Os07g13280OsAffx.5312.1.S1_s_at11/117+7625853..7627486expressed protein
LOC_Os07g13290OsAffx.5313.1.S1_at3/117+7629167..7629699hypothetical protein
LOC_Os07g13300NANA7+7630626..7633409RNA recognition motif family protein, expressed
LOC_Os07g13310OsAffx.10198.2.A1_at11/117+7634671..7635716hypothetical protein
LOC_Os07g13319OsAffx.1448.1.S1_at11/117+7636890..7638222hypothetical protein
LOC_Os07g13319OsAffx.20869.1.S1_at1/117+7636890..7638222hypothetical protein
LOC_Os07g13330OsAffx.22422.1.S1_at11/117+7644046..7644327hypothetical protein
LOC_Os07g13340NANA7+7646670..7655594retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5313.1.S1_at--496--611Chr07:7628623..7628647 (25 bp)
ATGCGTCCAAACAATTTGCTAGGCC
NONE
OsAffx.5313.1.S1_at--753--10711Chr07:7628638..7628662 (25 bp)
TTGCTAGGCCTCAGCTGCCATGTAG
NONE
OsAffx.5313.1.S1_at--1146--9171Chr07:7628653..7628677 (25 bp)
TGCCATGTAGGCTTAAGAACTTCAA
NONE
OsAffx.5313.1.S1_at--1001--5471Chr07:7628669..7628693 (25 bp)
GAACTTCAAAGGACACTACACCCAC
NONE
OsAffx.5313.1.S1_at--1019--2011Chr07:7628683..7629060 (25 bp)
ACTACACCCACAGTGCAAGACGGGT
NONE
OsAffx.5313.1.S1_at--136--5151Chr07:7629053..7629074 (22 bp)
GCAAGACGGGTCAAAGCGGCCACCA
NONE
OsAffx.5313.1.S1_at--1136--551Chr07:7629102..7629126 (25 bp)
ATCCTCTTCTTTCTATGGCGGGCGG
NONE
OsAffx.5313.1.S1_at--211--1291Chr07:7629145..7629169 (25 bp)
AGATCTGGCTAACCGTGGCAGCATG
NONE
OsAffx.5313.1.S1_at--392--1371Chr07:7629599..7629623 (25 bp)
AGACGAATCTCCCACGTGGAAGGGT
LOC_Os07g13290
OsAffx.5313.1.S1_at--618--5451Chr07:7629630..7629654 (25 bp)
GAACGACATGTCGACACACCGTGAA
LOC_Os07g13290
OsAffx.5313.1.S1_at--570--1831Chr07:7629643..7629667 (25 bp)
ACACACCGTGAACGCCCTAACAAGG
LOC_Os07g13290
Target Sequence 
ATGCGTCCAAACAATTTGCTAGGCCTCAGCTGCCATGTAGGCTTAAGAACTTCAAAGGACACTACACCCACAGTGCAAGA
CGGGTCAAAGCGGCCACCAACGCCACTCCGTCGAGCTCCACCTTCCATCCTCTTCTTTCTATGGCGGGCGGCGATGGGGC
TGACGGCGCAGATCTGGCTAACCGTGGCAGCATGGAGTGGAACAGTGCGGATCTAGCGGTGGGCCTCAGCGGCGGAGGAC
TCCGAGGCGGACTGATGGCCGGCGGAGCAAGAATGGAGACGAATCTCCCACGTGGAAGGGTGAGGGCGAACGACATGTCG
ACACACCGTGAACGCCCTAACAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5313.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis