Browse Element(s) Details


OsAffx.5356.1.S1_at

Description tigr:9635.m01794
TID=OsAffx.5356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1783011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17790NANA7+10520240..10523853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17800NANA7+10526982..10533652retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17810Os.51869.1.S1_at2/117+10535832..10538453retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g17820OsAffx.5355.1.S1_at11/117+10540233..10540544hypothetical protein
LOC_Os07g17830OsAffx.5356.1.S1_at11/117+10543677..10544222hypothetical protein
LOC_Os07g17840OsAffx.16314.1.S1_at11/117+10545832..10552192hypothetical protein
LOC_Os07g17840OsAffx.10439.1.S1_at3/117+10545832..10552192hypothetical protein
LOC_Os07g17850OsAffx.24046.2.S1_x_at11/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.7.S1_x_at4/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.3.S1_x_at1/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17850OsAffx.24046.5.S1_x_at1/117+10563238..10565568hAT family dimerisation domain containing protein
LOC_Os07g17860OsAffx.28496.2.S1_at11/117+10568443..10571852hypothetical protein
LOC_Os07g17860OsAffx.14745.1.S1_at1/117+10568443..10571852hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5356.1.S1_at--118--2791Chr07:10544150..10544174 (25 bp)
AAGAGACCACTTCCGACGACCGAAG
LOC_Os07g17830
OsAffx.5356.1.S1_at--302--651Chr07:10544106..10544130 (25 bp)
ATGCAGCAATGCGATACTCGACAAA
LOC_Os07g17830
OsAffx.5356.1.S1_at--151--6471Chr07:10544094..10544118 (25 bp)
GATACTCGACAAACTCCCTGAAAAG
LOC_Os07g17830
OsAffx.5356.1.S1_at--13--6531Chr07:10544020..10544044 (25 bp)
GATTTGACCAAGACCTTTCCGACCT
LOC_Os07g17830
OsAffx.5356.1.S1_at--46--1751Chr07:10544008..10544032 (25 bp)
ACCTTTCCGACCTAGGAGCAAGCAT
LOC_Os07g17830
OsAffx.5356.1.S1_at--550--6351Chr07:10543923..10543947 (25 bp)
GATGCGCCTACAGCTAGTCGATTCT
LOC_Os07g17830
OsAffx.5356.1.S1_at--383--2151Chr07:10543914..10543938 (25 bp)
ACAGCTAGTCGATTCTTCGGTCTAT
LOC_Os07g17830
OsAffx.5356.1.S1_at--340--3651Chr07:10543900..10543924 (25 bp)
CTTCGGTCTATTTTCCAGCTGGGAT
LOC_Os07g17830
OsAffx.5356.1.S1_at--1126--1771Chr07:10543760..10543784 (25 bp)
ACCGCGAACGCCAACTTTGATGTGG
LOC_Os07g17830
OsAffx.5356.1.S1_at--948--7571Chr07:10543735..10543759 (25 bp)
GGGCGGGAAGTATCTGTCTCCTATC
LOC_Os07g17830
OsAffx.5356.1.S1_at--296--6911Chr07:10543726..10543750 (25 bp)
GTATCTGTCTCCTATCAACAGGAAG
LOC_Os07g17830
Target Sequence 
AAGAGACCACTTCCGACGACCGAAGTGGTTAAACTAATGGAGGAATGCAGCAATGCGATACTCGACAAACTCCCTGAAAA
GAAGAAGGATCCGGGGTGTCCCACAATCACTTGCTCGATCGGGACACAAAGATTTGACCAAGACCTTTCCGACCTAGGAG
CAAGCATAAGCGTCATGCCCAAAGACGTTTTCGACATGCTCAACTTCACGGTGTTGGCACCAACACCGATGCGCCTACAG
CTAGTCGATTCTTCGGTCTATTTTCCAGCTGGGATAGCGGAAGACGTACCGGTTAAGATACGGGATTTCTTCATCCCGGT
TGACTTCGTGGTGTTGGATATGGATTCAGACAAGGAGACGCCACTTATCTTGGGGCATCCGTTCCTTAGCACCGCGAACG
CCAACTTTGATGTGGGGGCGGGAAGTATCTGTCTCCTATCAACAGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis