Browse Element(s) Details


OsAffx.5387.1.S1_at

Description tigr:9635.m02027
TID=OsAffx.5387.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g205709/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g20530OsAffx.28530.1.S1_at10/117+11858096..11859486hypothetical protein
LOC_Os07g20530Os.31535.1.A1_at1/117+11858096..11859486hypothetical protein
LOC_Os07g20544OsAffx.5386.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20544Os.49205.1.S1_at11/117+11863847..11872542aspartate kinase family protein, expressed
LOC_Os07g20560NANA7+11876946..11881654retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g20570OsAffx.5387.1.S1_at9/117+11883225..11884009hypothetical protein
LOC_Os07g20580Os.54215.1.S1_x_at10/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20580OsAffx.31822.1.S1_at1/117+11885483..11892727ATP-dependent RNA helicase DBP3, putative, expressed
LOC_Os07g20590OsAffx.16347.1.S1_at11/117+11901758..11902253hypothetical protein
LOC_Os07g20600OsAffx.5388.1.S1_at11/117+11907024..11907524expressed protein
LOC_Os07g20610OsAffx.28531.1.S1_at11/117+11908142..11911997Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5387.1.S1_at--39--3551Chr07:11883942..11883966 (25 bp)
CATCGCTGCTGCTCGCTTGCTCGAA
LOC_Os07g20570
OsAffx.5387.1.S1_at--272--4771Chr07:11883938..11883962 (25 bp)
GCTGCTGCTCGCTTGCTCGAACGTG
LOC_Os07g20570
OsAffx.5387.1.S1_at--1127--9091Chr07:11883933..11883957 (25 bp)
TGCTCGCTTGCTCGAACGTGCCAGA
LOC_Os07g20570
OsAffx.5387.1.S1_at--586--9351Chr07:11883930..11883954 (25 bp)
TCGCTTGCTCGAACGTGCCAGAGAG
LOC_Os07g20570
OsAffx.5387.1.S1_at--197--4911Chr07:11883928..11883952 (25 bp)
GCTTGCTCGAACGTGCCAGAGAGAA
LOC_Os07g20570
OsAffx.5387.1.S1_at--329--3631Chr07:11883927..11883951 (25 bp)
CTTGCTCGAACGTGCCAGAGAGAAG
LOC_Os07g20570
OsAffx.5387.1.S1_at--1098--9531Chr07:11883871..11883895 (25 bp)
TTTGTCCCTCGGCAATCGACCGAAG
LOC_Os07g20570
OsAffx.5387.1.S1_at--482--8711Chr07:11883871..11883893 (23 bp)
TGTCCCTCGGCAATCGACCGAAGAG
LOC_Os07g20570
OsAffx.5387.1.S1_at--196--9311Chr07:11883871..11883891 (21 bp)
TCCCTCGGCAATCGACCGAAGAGGA
LOC_Os07g20570
OsAffx.5387.1.S1_at--77--4291NONE
CCTCGGCAATCGACCGAAGAGGAAG
NONE
OsAffx.5387.1.S1_at--1068--5151NONE
GCAATCGACCGAAGAGGAAGGTGAA
NONE
Target Sequence 
CATCGCTGCTGCTCGCTTGCTCGAACGTGCCAGAGAGAAGGGGATTAGGGAGAAGAGAATGGGATTTGGGTTTTGTCCCT
CGGCAATCGACCGAAGAGGAAGGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5387.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis