Browse Element(s) Details


OsAffx.5417.1.S1_at

Description tigr:9635.m02265
TID=OsAffx.5417.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2377010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g23740OsAffx.28558.1.S1_at11/117+13398473..13400871hypothetical protein
LOC_Os07g23750Os.27313.1.A1_at11/117+13403550..13410326Sterol 3-beta-glucosyltransferase, putative, expressed
LOC_Os07g23760NANA7+13418259..13419015hypothetical protein
LOC_Os07g23770OsAffx.5417.1.S1_at10/117+13424155..13425342hypothetical protein
LOC_Os07g23780OsAffx.28559.1.S1_at11/117+13431609..13431995hypothetical protein
LOC_Os07g23790Os.11647.2.S1_a_at11/117+13435053..13438500expressed protein
LOC_Os07g23800OsAffx.16385.1.S1_at10/117+13439437..13440756Ribosomal protein S5, C-terminal domain containing protein, expressed
LOC_Os07g23810OsAffx.16386.1.S1_at10/117+13441784..13444008hypothetical protein
LOC_Os07g23810OsAffx.16386.1.S1_x_at9/117+13441784..13444008hypothetical protein
LOC_Os07g23810Os.35837.2.S1_x_at8/117+13441784..13444008hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5417.1.S1_at--313--9531Chr07:13424216..13424240 (25 bp)
TCTTGAGCATCGTAACCCCGTTGGG
LOC_Os07g23770
OsAffx.5417.1.S1_at--197--3651Chr07:13424260..13424284 (25 bp)
CTTCTCTCCATAGTGGAATCCTCAG
LOC_Os07g23770
OsAffx.5417.1.S1_at--718--5251NONE
GAATCCTCAGGTGAATGCCTTCCCA
NONE
OsAffx.5417.1.S1_at--317--431Chr07:13424879..13424903 (25 bp)
ATCATTTGCAGCATTTGCACTCCCT
LOC_Os07g23770
OsAffx.5417.1.S1_at--559--2531Chr07:13424930..13424954 (25 bp)
AACTCTTTCAACCTGGAGACTGGGA
LOC_Os07g23770
OsAffx.5417.1.S1_at--526--8051Chr07:13424964..13424988 (25 bp)
GGAGATCAAGGTGGCAACCCCTGCA
LOC_Os07g23770
OsAffx.5417.1.S1_at--1114--911Chr07:13425143..13425167 (25 bp)
AGGCTCATGGGACAGCAGCAGCTCC
LOC_Os07g23770
OsAffx.5417.1.S1_at--577--1591Chr07:13425162..13425186 (25 bp)
AGCTCCTCCTCATCCAGAAGAGAAG
LOC_Os07g23770
OsAffx.5417.1.S1_at--344--1451Chr07:13425185..13425209 (25 bp)
AGAAGCCTGTGAAGAGCAACCTCAA
LOC_Os07g23770
OsAffx.5417.1.S1_at--824--2931Chr07:13425211..13425235 (25 bp)
AAGGCACCACCAGCTGCAGTTGCAG
LOC_Os07g23770
OsAffx.5417.1.S1_at--397--4491Chr07:13425288..13425312 (25 bp)
GCCGGATGCTCAGGGCAAGGATCTT
LOC_Os07g23770
Target Sequence 
TCTTGAGCATCGTAACCCCGTTGGGGGGCACTGTCATGGTGTCTCTTCTCTCCATAGTGGAATCCTCAGGTGAATGCCTT
CCCACTTCCTATATCAAAATCCCCCATCATTTGCAGCATTTGCACTCCCTCTCCCTCTCTCTCTCTCTTCCCACTAAACT
CTTTCAACCTGGAGACTGGGACAAGGTGGAGGAGATCAAGGTGGCAACCCCTGCAGGTGCTGAGTGCAGGAGGTGCATCC
TCCCTCCCATTGTGTGCTCCTCCTGCTATGCACCTCCAGCACCCAGCAGCTGCAGCAGCCATGGCTGCTCCTGCTCCCCC
AGCAACAGCTCACCTCCAGCAGCAGAAGCCTGCAATGGCAGCAGGCAGCAGGCTCATGGGACAGCAGCAGCTCCTCCTCA
TCCAGAAGAGAAGAAGCCTGTGAAGAGCAACCTCAAGAAGGCACCACCAGCTGCAGTTGCAGCTCAGGAAGAGAAGAACA
GGGTGTCGTTGGTGGTGAGCAGGAAGGTGACCTGGCCGGATGCTCAGGGCAAGGATCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5417.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis