Browse Element(s) Details


OsAffx.5444.1.S1_x_at

Description tigr:9635.m02499
TID=OsAffx.5444.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2601010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g25960Os.32823.2.S1_s_at1/117+14898193..14899748expressed protein
LOC_Os07g25970NANA7+14900416..14903096hypothetical protein
LOC_Os07g25980NANA7+14905316..14905935retrotransposon protein, putative, unclassified
LOC_Os07g25990NANA7+14908297..14909779retrotransposon protein, putative, unclassified
LOC_Os07g26000Os.27775.1.A1_at11/117+14914349..14918754F-box domain containing protein, expressed
LOC_Os07g26010OsAffx.5444.1.S1_x_at10/117+14920757..14921624hypothetical protein
LOC_Os07g26020OsAffx.5445.1.S1_at10/117+14923630..14930932hypothetical protein
LOC_Os07g26020OsAffx.20631.1.S1_x_at7/117+14923630..14930932hypothetical protein
LOC_Os07g26020Os.49936.2.A1_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26020OsAffx.28918.4.S1_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26020Os.33601.3.S1_x_at1/117+14923630..14930932hypothetical protein
LOC_Os07g26030OsAffx.30350.1.S1_at2/117+14931314..14934464retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26040NANA7+14934845..14937265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g26050OsAffx.16416.1.S1_x_at11/117+14941372..14941709hypothetical protein
LOC_Os07g26050OsAffx.16416.1.S1_at11/117+14941372..14941709hypothetical protein
LOC_Os07g26060NANA7+14945128..14945693hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5444.1.S1_x_at--404--4711Chr07:14921562..14921586 (25 bp)
GCTGGCGAAGCTCTCCACCGATGGA
LOC_Os07g26010
OsAffx.5444.1.S1_x_at--844--8471Chr07:14921560..14921584 (25 bp)
TGGCGAAGCTCTCCACCGATGGAGC
LOC_Os07g26010
OsAffx.5444.1.S1_x_at--643--1791Chr07:14921546..14921570 (25 bp)
ACCGATGGAGCCCTTCTTCCAGAGC
LOC_Os07g26010
OsAffx.5444.1.S1_x_at--378--4051Chr07:14921544..14921568 (25 bp)
CGATGGAGCCCTTCTTCCAGAGCAA
LOC_Os07g26010
OsAffx.5444.1.S1_x_at--1118--6231Chr07:14921543..14921567 (25 bp)
GATGGAGCCCTTCTTCCAGAGCAAG
LOC_Os07g26010
OsAffx.5444.1.S1_x_at--1088--831Chr07:14921542..14921566 (25 bp)
ATGGAGCCCTTCTTCCAGAGCAAGA
LOC_Os07g26010
OsAffx.5444.1.S1_x_at--1098--8531Chr07:14921541..14921565 (25 bp)
TGGAGCCCTTCTTCCAGAGCAAGAC
LOC_Os07g26010
OsAffx.5444.1.S1_x_at--274--1671Chr07:14921538..14921562 (25 bp)
AGCCCTTCTTCCAGAGCAAGACATG
LOC_Os07g26010
OsAffx.5444.1.S1_x_at--408--10671Chr07:14921530..14921554 (25 bp)
TTCCAGAGCAAGACATGGCCCAAGA
LOC_Os07g26010
OsAffx.5444.1.S1_x_at--840--3233Chr06:18969020..18969046 (24 bp)
CAAGACATGGCCCAAGAAGAAGGAG
NONE
OsAffx.5444.1.S1_x_at--613--1451NONE
AGAAGAAGGAGCTCTCCGCGCGGAT
NONE
Target Sequence 
GCTGGCGAAGCTCTCCACCGATGGAGCCCTTCTTCCAGAGCAAGACATGGCCCAAGAAGAAGGAGCTCTCCGCGCGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5444.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis