Browse Element(s) Details


OsAffx.5575.1.S1_at

Description tigr:9635.m03906
TID=OsAffx.5575.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3920010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g39150OsAffx.32166.1218.S1_x_at9/117+23454664..23456106hypothetical protein
LOC_Os07g39170NANA7+23461676..23466848retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39180OsAffx.16630.1.S1_at8/117+23469634..23470022hypothetical protein
LOC_Os07g39190Os.55665.1.S1_at11/117+23475602..23476621expressed protein
LOC_Os07g39200OsAffx.5575.1.S1_at10/117+23477145..23477603hypothetical protein
LOC_Os07g39210OsAffx.16631.1.S1_at11/117+23478203..23478930expressed protein
LOC_Os07g39220Os.54781.1.S1_at10/117+23482115..23483650BES1/BZR1 homolog protein 1, putative, expressed
LOC_Os07g39230OsAffx.7916.1.S1_at8/117+23484464..23488788retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g39240Os.49954.1.S1_at11/117+23489983..23493339expressed protein
LOC_Os07g39250OsAffx.16632.1.S1_at11/117+23495385..23498593expressed protein
LOC_Os07g39260OsAffx.16633.1.S1_at11/117+23501607..23502170expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5575.1.S1_at--160--10251Chr07:23477253..23477499 (25 bp)
TTTGTGGGTTTTAGGGTGATGCTCA
LOC_Os07g39200
OsAffx.5575.1.S1_at--551--7871NONE
GGTTTTAGGGTGATGCTCACTGATC
NONE
OsAffx.5575.1.S1_at--52--10091Chr07:23477264..23477510 (25 bp)
TAGGGTGATGCTCACTGATCAGAAA
LOC_Os07g39200
OsAffx.5575.1.S1_at--763--7751Chr07:23477492..23477513 (22 bp)
GGTGATGCTCACTGATCAGAAAAAT
LOC_Os07g39200
OsAffx.5575.1.S1_at--1028--331Chr07:23477512..23477536 (25 bp)
ATAAACAACGGCTACTACCTAGTGT
LOC_Os07g39200
OsAffx.5575.1.S1_at--384--2571Chr07:23477518..23477542 (25 bp)
AACGGCTACTACCTAGTGTGACTTA
LOC_Os07g39200
OsAffx.5575.1.S1_at--173--4831Chr07:23477522..23477546 (25 bp)
GCTACTACCTAGTGTGACTTACCCA
LOC_Os07g39200
OsAffx.5575.1.S1_at--1156--9871Chr07:23477524..23477548 (25 bp)
TACTACCTAGTGTGACTTACCCAAA
LOC_Os07g39200
OsAffx.5575.1.S1_at--860--7351Chr07:23477535..23477559 (25 bp)
GTGACTTACCCAAAAACTAACAGCG
LOC_Os07g39200
OsAffx.5575.1.S1_at--165--10471Chr07:23477540..23477564 (25 bp)
TTACCCAAAAACTAACAGCGGAGCA
LOC_Os07g39200
OsAffx.5575.1.S1_at--748--2531Chr07:23477549..23477573 (25 bp)
AACTAACAGCGGAGCAAAGGTAGGA
LOC_Os07g39200
Target Sequence 
TTTGTGGGTTTTAGGGTGATGCTCACTGATCAGAAAAATAAACAACGGCTACTACCTAGTGTGACTTACCCAAAAACTAA
CAGCGGAGCAAAGGTAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5575.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis