Browse Element(s) Details


OsAffx.5589.1.S1_at

Description tigr:9635.m04111
TID=OsAffx.5589.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4110010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g41080OsAffx.16668.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.25481.1.S1_at11/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.3237.1.S1_at4/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080OsAffx.24649.2.S1_x_at2/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41080Os.54545.1.S1_at1/117+24573467..24582564hydrolase, alpha/beta fold family protein
LOC_Os07g41090Os.49398.1.S1_at11/117+24590316..24596658Histone deacetylase family protein, expressed
LOC_Os07g41100OsAffx.5589.1.S1_at10/117+24599631..24600744hypothetical protein
LOC_Os07g41110NANA7+24601549..24607538retrotransposon protein, putative, unclassified
LOC_Os07g41120Os.52218.1.S1_x_at11/117+24608506..24611994RNA recognition motif family protein
LOC_Os07g41140Os.12644.1.S1_at11/117+24619369..24623214Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5589.1.S1_at--946--471NONE
ATCTGATCGCGGGTGGCATCAACGA
NONE
OsAffx.5589.1.S1_at--1047--4951Chr07:24599839..24599863 (25 bp)
GCATCAACGACAACAACTCTACCAA
LOC_Os07g41100
OsAffx.5589.1.S1_at--421--5611Chr07:24599831..24599855 (25 bp)
GACAACAACTCTACCAACAACTTCA
LOC_Os07g41100
OsAffx.5589.1.S1_at--61--2471Chr07:24599816..24599840 (25 bp)
AACAACTTCAGCCACGGCGGTTTTG
LOC_Os07g41100
OsAffx.5589.1.S1_at--72--10531Chr07:24599810..24599834 (25 bp)
TTCAGCCACGGCGGTTTTGATGCAA
LOC_Os07g41100
OsAffx.5589.1.S1_at--278--131Chr07:24599772..24599796 (25 bp)
ATTCAGCGGCGGACAGTTTGGTGCC
LOC_Os07g41100
OsAffx.5589.1.S1_at--847--4671Chr07:24599747..24599771 (25 bp)
GCGGGTGGCAACTCCAGCATCAAGA
LOC_Os07g41100
OsAffx.5589.1.S1_at--901--4351Chr07:24599734..24599758 (25 bp)
CCAGCATCAAGACCGCCGCTAGAGG
LOC_Os07g41100
OsAffx.5589.1.S1_at--689--3712Chr07:24599716..24599740 (25 bp)
CTAGAGGATTTGGTGGCAGCCGCGG
LOC_Os07g41100
OsAffx.5589.1.S1_at--918--811Chr07:24599668..24599692 (25 bp)
ATGGAGGTAGCCAGGTTCAGTACAA
LOC_Os07g41100
OsAffx.5589.1.S1_at--11--8031Chr07:24599666..24599690 (25 bp)
GGAGGTAGCCAGGTTCAGTACAATA
LOC_Os07g41100
Target Sequence 
ATCTGATCGCGGGTGGCATCAACGACAACAACTCTACCAACAACTTCAGCCACGGCGGTTTTGATGCAAACGGTGGTGGT
GGATTCAGCGGCGGACAGTTTGGTGCCGCGGGTGGCAACTCCAGCATCAAGACCGCCGCTAGAGGATTTGGTGGCAGCCG
CGGTGGCGGTGGCGGGGCCATGGGCTATGGAGGTAGCCAGGTTCAGTACAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5589.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis