Browse Element(s) Details


OsAffx.560.1.S1_at

Description gb:XM_354054.1
DB_XREF= gi:35189541
GEN=P0450A04.10
TID=OsAffx.560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4704011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47020NANA7+28091333..28094259transposon protein, putative, Mutator sub-class
LOC_Os07g47030Os.45962.1.S1_a_at11/117+28099592..28107839expressed protein
LOC_Os07g47040Os.8736.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040OsAffx.560.1.S1_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.2.S1_x_at11/117+28116394..28123660expressed protein
LOC_Os07g47040Os.8736.1.S1_a_at11/117+28116394..28123660expressed protein
LOC_Os07g47050NANA7+28124725..28125967retrotransposon protein, putative, unclassified
LOC_Os07g47060OsAffx.16740.1.S1_at11/117+28128030..28128670hypothetical protein
LOC_Os07g47070OsAffx.16741.1.S1_s_at11/117+28132446..28138961expressed protein
LOC_Os07g47070Os.46037.1.S1_x_at11/117+28132446..28138961expressed protein
LOC_Os07g47080OsAffx.28938.1.S1_at11/117+28140917..28142084hypothetical protein
LOC_Os07g47090Os.35203.1.S1_at11/117+28144805..28147907kinase interacting family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.560.1.S1_at--1058--6451Chr07:28119656..28119680 (25 bp)
GATAAATCTCAAAAGTTTATTCTTG
LOC_Os07g47040
OsAffx.560.1.S1_at--625--3611Chr07:28119677..28119701 (25 bp)
CTTGATGATAATTTGGGACCATATG
LOC_Os07g47040
OsAffx.560.1.S1_at--1112--3091Chr07:28119686..28119710 (25 bp)
AATTTGGGACCATATGGTGTTTGCT
LOC_Os07g47040
OsAffx.560.1.S1_at--905--7631Chr07:28119691..28119715 (25 bp)
GGGACCATATGGTGTTTGCTGGTTC
LOC_Os07g47040
OsAffx.560.1.S1_at--768--3571Chr07:28119696..28119720 (25 bp)
CATATGGTGTTTGCTGGTTCTTCTG
LOC_Os07g47040
OsAffx.560.1.S1_at--16--9131Chr07:28119707..28119731 (25 bp)
TGCTGGTTCTTCTGTTACTGCACTG
LOC_Os07g47040
OsAffx.560.1.S1_at--490--3871Chr07:28119718..28119742 (25 bp)
CTGTTACTGCACTGTTGTCACACAC
LOC_Os07g47040
OsAffx.560.1.S1_at--249--8791Chr07:28119719..28119743 (25 bp)
TGTTACTGCACTGTTGTCACACACC
LOC_Os07g47040
OsAffx.560.1.S1_at--627--10471Chr07:28119721..28119745 (25 bp)
TTACTGCACTGTTGTCACACACCCG
LOC_Os07g47040
OsAffx.560.1.S1_at--386--2191Chr07:28119737..28119757 (21 bp)
ACACACCCGCACATGCCAATAAATT
LOC_Os07g47040
OsAffx.560.1.S1_at--15--2171Chr07:28119739..28119854 (25 bp)
ACACCCGCACATGCCAATAAATTTG
LOC_Os07g47040
Target Sequence 
GATAAATCTCAAAAGTTTATTCTTGATGATAATTTGGGACCATATGGTGTTTGCTGGTTCTTCTGTTACTGCACTGTTGT
CACACACCCGCACATGCCAATAAATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis