Browse Element(s) Details


OsAffx.5632.1.S1_x_at

Description tigr:9635.m04457
TID=OsAffx.5632.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4438011/11Dirigent-like protein
LOC_Os02g420203/11expressed protein
LOC_Os04g112303/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g352402/11transposon protein, putative, unclassified, expressed
LOC_Os11g094002/11retrotransposon protein, putative, unclassified
LOC_Os10g386302/11glutathione S-transferase GSTU6, putative, expressed
LOC_Os03g587202/11RNA recognition motif family protein, expressed
LOC_Os09g280402/11prolyl oligopeptidase family protein, expressed
LOC_Os02g164602/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g442601/11Dirigent-like protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44340NANA7+26490730..26493859retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g44350Os.7186.1.S1_at11/117+26499770..26502532Novel plant SNARE 11, putative, expressed
LOC_Os07g44360OsAffx.28899.1.S1_at11/117+26502757..26509762Serine/threonine-protein kinase Haspin, putative, expressed
LOC_Os07g44370NANA7+26514613..26515358Dirigent-like protein, expressed
LOC_Os07g44380OsAffx.5632.1.S1_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44380OsAffx.5632.1.S1_x_at11/117+26518435..26518995Dirigent-like protein
LOC_Os07g44390Os.27639.1.S1_x_at8/117+26520241..26524465transposon protein, putative, unclassified
LOC_Os07g44400Os.5059.1.S1_at11/117+26526229..26529197kinesin motor protein, putative, expressed
LOC_Os07g44410Os.15471.1.S1_at10/117+26541302..26543485WD40-like Beta Propeller Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0006952biological_processdefense response
GO:0009407biological_processtoxin catabolism
GO:0009807biological_processlignan biosynthesis
GO:0005737cellular_componentcytoplasm
GO:0009507cellular_componentchloroplast
GO:0003723molecular_functionRNA binding
GO:0004364molecular_functionglutathione transferase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5632.1.S1_x_at--314--9671Chr07:26518502..26518526 (25 bp)
TCAGCTCGGCGACCGTCGTCCATGG
LOC_Os07g44380
OsAffx.5632.1.S1_x_at--733--971Chr07:26518574..26518598 (25 bp)
AGGAGATGAGGCTCTACTTCCACGA
LOC_Os07g44380
OsAffx.5632.1.S1_x_at--1102--9932Chr07:26518606..26518630 (25 bp)
TACGACTTCAGCAACAGCACGGCCA
LOC_Os07g44380
OsAffx.5632.1.S1_x_at--172--10531Chr07:26518612..26518636 (25 bp)
TTCAGCAACAGCACGGCCAACTCGA
LOC_Os07g44380
OsAffx.5632.1.S1_x_at--207--8414Chr07:26518891..26518915 (25 bp)
GGCGCCGTGTTGAACTTTGCACTAG
LOC_Os07g44380
OsAffx.5632.1.S1_x_at--996--7419Chr07:26518897..26518921 (25 bp)
GTGTTGAACTTTGCACTAGGATCAC
LOC_Os07g44380
OsAffx.5632.1.S1_x_at--977--5471Chr07:26518902..26518926 (25 bp)
GAACTTTGCACTAGGATCACATAGG
LOC_Os07g44380
OsAffx.5632.1.S1_x_at--1027--9011Chr07:26518908..26518932 (25 bp)
TGCACTAGGATCACATAGGTTAGAT
LOC_Os07g44380
OsAffx.5632.1.S1_x_at--736--101106Chr12:11508185..11508209 (25 bp)
AGGTTAGATCTAGTCGGGTGGTTCT
NONE
OsAffx.5632.1.S1_x_at--930--953105Chr12:11508193..11508217 (25 bp)
TCTAGTCGGGTGGTTCTATTTGGGT
NONE
OsAffx.5632.1.S1_x_at--179--92738Chr12:11508198..11508222 (25 bp)
TCGGGTGGTTCTATTTGGGTTTGAT
NONE
Target Sequence 
TCAGCTCGGCGACCGTCGTCCATGGCGGCGGCGGCGGCAGGAGGTTCGTCAGGAGCTACGACGAGCCGTGCAAGGAGATG
AGGCTCTACTTCCACGACATCCTCTACGACTTCAGCAACAGCACGGCCAACTCGACGTCGGCGGTGGTCGCCTCGCCGGC
GGCGCTGCTGAGGGCGGCGAAGAACACCACCATCTTCGGCACGACGGTGGTGTTCAACGACCCGATGACGGAGGGGACGA
GCGCGCTGCCGCCGTCGCTGGAGGAGACGGCGGTGAGGGCGCAGGGGCTCTACCTCTACGACGGCAAGGCGGCGTCGACG
CTGAACGCGTGGCTCGCCTTCTCCGTCGTGTTCAACTCCACGGCGCGCCGCGGCACGCTCAGCCTCATGGGCGCCGTGTT
GAACTTTGCACTAGGATCACATAGGTTAGATCTAGTCGGGTGGTTCTATTTGGGTTTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5632.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis