Browse Element(s) Details


OsAffx.5674.1.S1_at

Description tigr:9636.m00021
TID=OsAffx.5674.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=harpin induced gene 1 homolog
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0121011/11Harpin-induced protein 1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01190OsAffx.16772.1.S1_at11/118+132109..132924uncharacterized plant-specific domain TIGR01568 family protein
LOC_Os08g01200OsAffx.28971.1.S1_at11/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.28971.2.S1_x_at8/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.29536.5.S1_x_at1/118+135650..137878hypothetical protein
LOC_Os08g01210OsAffx.5674.1.S1_at11/118+141542..142108Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01220Os.9488.1.S1_at11/118+145561..147105Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01230NANA8+148536..150233hypothetical protein
LOC_Os08g01240Os.39278.1.A1_at11/118+152768..153560expressed protein
LOC_Os08g01240Os.247.1.S1_at1/118+152768..153560expressed protein
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
GO:0042828biological_processresponse to pathogen
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5674.1.S1_at--1088--7431Chr08:142054..142078 (25 bp)
GTGTACCTCATGTTCCGGCCAAACC
LOC_Os08g01210
OsAffx.5674.1.S1_at--1037--9491Chr08:141990..142014 (25 bp)
TCTCGCTGGCGCTCAAGGAGTGGAC
LOC_Os08g01210
OsAffx.5674.1.S1_at--271--991Chr08:141975..141999 (25 bp)
AGGAGTGGACGCTGAGCTACAACCT
LOC_Os08g01210
OsAffx.5674.1.S1_at--777--1091Chr08:141972..141996 (25 bp)
AGTGGACGCTGAGCTACAACCTGTC
LOC_Os08g01210
OsAffx.5674.1.S1_at--341--8111Chr08:141969..141993 (25 bp)
GGACGCTGAGCTACAACCTGTCGGT
LOC_Os08g01210
OsAffx.5674.1.S1_at--894--7711Chr08:141941..141965 (25 bp)
GGTGGACCTGACGAGGCACAACGCC
LOC_Os08g01210
OsAffx.5674.1.S1_at--739--2951Chr08:141786..141810 (25 bp)
AAGGCCGCCACCAGCTCTTGGGCGG
LOC_Os08g01210
OsAffx.5674.1.S1_at--512--951Chr08:141735..141759 (25 bp)
AGGACACCGAGGGCATCTACTCCAT
LOC_Os08g01210
OsAffx.5674.1.S1_at--215--1831Chr08:141673..141697 (25 bp)
ACGCCGTCCGCCATTATCAGGCTGC
LOC_Os08g01210
OsAffx.5674.1.S1_at--928--2011Chr08:141574..141598 (25 bp)
ACTAATAATCATAATCCCCACCACT
LOC_Os08g01210
OsAffx.5674.1.S1_at--676--9751Chr08:141572..141596 (25 bp)
TAATAATCATAATCCCCACCACTTC
LOC_Os08g01210
Target Sequence 
GTGTACCTCATGTTCCGGCCAAACCTCCTGCACGCGACGGCGGCGGGGGCGGAGCTGTCCACCTTCTCGCTGGCGCTCAA
GGAGTGGACGCTGAGCTACAACCTGTCGGTGGGGGTGGACCTGACGAGGCACAACGCCCGCCTCGCCCTCCGCTACCACT
CCATCGCCGCCGACGCCTACTACCACGACCAGCGCTTCGCCCACGCCCTCCTCCCTGACTTCTCCCAGCCCGCCTCCACC
AACACCACCCGCATCACCCCCTCCTTCCAAGGCCGCCACCAGCTCTTGGGCGGCCTCGCCGCCGCCGCCTTCCGCCGCGA
GGACACCGAGGGCATCTACTCCATCCACGTCACCATGGCCGCCAAGACCGAGATCAAGCTCACGCCGTCCGCCATTATCA
GGCTGCCCGGCCCCAACATCAAGCTCGACTGCCCCCTCAGGCTCCGCCTCCACCCTTCTCCTTCCAACGCCACCACCACC
ACTAATAATCATAATCCCCACCACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis