Browse Element(s) Details


OsAffx.5675.1.S1_at

Description tigr:9636.m00026
TID=OsAffx.5675.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0126011/11VQ motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g01200OsAffx.28971.1.S1_at11/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.28971.2.S1_x_at8/118+135650..137878hypothetical protein
LOC_Os08g01200OsAffx.29536.5.S1_x_at1/118+135650..137878hypothetical protein
LOC_Os08g01210OsAffx.5674.1.S1_at11/118+141542..142108Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01220Os.9488.1.S1_at11/118+145561..147105Harpin-induced protein 1 containing protein, expressed
LOC_Os08g01230NANA8+148536..150233hypothetical protein
LOC_Os08g01240Os.39278.1.A1_at11/118+152768..153560expressed protein
LOC_Os08g01240Os.247.1.S1_at1/118+152768..153560expressed protein
LOC_Os08g01250Os.47130.4.A1_x_at1/118+157810..158136retrotransposon protein, putative, unclassified
LOC_Os08g01260OsAffx.5675.1.S1_at11/118+161613..162236VQ motif family protein, expressed
LOC_Os08g01270Os.7969.1.S1_x_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270Os.7969.2.S1_at11/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01270OsAffx.27799.1.S1_at1/118+165703..173085Protein kinase domain containing protein, expressed
LOC_Os08g01280OsAffx.28973.1.S1_at11/118+176623..178954ACT domain containing protein
LOC_Os08g01290Os.27120.1.S2_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01290Os.27120.1.S1_at11/118+180764..185532Tubby protein, putative, expressed
LOC_Os08g01300NANA8+184899..188158zinc finger family protein, putative

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Gene Ontology Classification
GO idTypeName
GO:0009870biological_processdefense response signaling pathway, resistance gene-dependent
GO:0005634cellular_componentnucleus
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5675.1.S1_at--953--1031Chr08:161695..161719 (25 bp)
AGGTCCGCAAGGAGTCTCACAAGAT
LOC_Os08g01260
OsAffx.5675.1.S1_at--546--8031Chr08:161705..161729 (25 bp)
GGAGTCTCACAAGATCAGGAAGCAG
LOC_Os08g01260
OsAffx.5675.1.S1_at--1053--411Chr08:161760..161784 (25 bp)
ATCATCTACACCATGTCGCCCAAGG
LOC_Os08g01260
OsAffx.5675.1.S1_at--76--1491Chr08:161932..161956 (25 bp)
AGCAAGATGCTTGGCCCCAGCAGCA
LOC_Os08g01260
OsAffx.5675.1.S1_at--511--4431Chr08:161970..161994 (25 bp)
GCCATCGAGCAAGCGGCAGCACGGA
LOC_Os08g01260
OsAffx.5675.1.S1_at--849--8131Chr08:162046..162070 (25 bp)
GGACAGTACTGCCAGCTATCCCGGC
LOC_Os08g01260
OsAffx.5675.1.S1_at--234--1671Chr08:162099..162123 (25 bp)
AGCCCCGTGCCATTTCTTGGTGCAA
LOC_Os08g01260
OsAffx.5675.1.S1_at--447--3611Chr08:162114..162138 (25 bp)
CTTGGTGCAACGACTACTTCTTCTG
LOC_Os08g01260
OsAffx.5675.1.S1_at--985--1891Chr08:162150..162174 (25 bp)
ACGTCGCCGTCTCCAATGGGCGGCA
LOC_Os08g01260
OsAffx.5675.1.S1_at--410--8351Chr08:162168..162192 (25 bp)
GGCGGCAGCGCCTACTATTGGGATC
LOC_Os08g01260
OsAffx.5675.1.S1_at--362--3691Chr08:162182..162206 (25 bp)
CTATTGGGATCTCTTCAACATGCAG
LOC_Os08g01260
Target Sequence 
AGGTCCGCAAGGAGTCTCACAAGATCAGGAAGCAGGAGCCGGTGCAGCAGCTCCGGCAGCCGGTCATCATCTACACCATG
TCGCCCAAGGTCGTCCACGCCAACGCCGCCGACTTCATGTCCGTCGTGCAGCGCCTCACCGGCGCCCCGCCCACCGCACC
GCCGCAGCCGCAGCCGCACCACCCCACGCTCTTGGCGCAGATGCCGCCGCAGCCGTCGTTCCCTTTCCACCTCCAACAGC
AAGATGCTTGGCCCCAGCAGCAGCACTCGCCCGCCGCCATCGAGCAAGCGGCAGCACGGAGCTCCGGCGCCGATCTGCCA
CCGTTGCCGAGCATCCTGTCGCCGGTGCCGGGGACAGTACTGCCAGCTATCCCGGCGAGCTTCTTCTCCCCGCCGTCGTT
GATCAGCCCCGTGCCATTTCTTGGTGCAACGACTACTTCTTCTGCTGCGCCGTCGACGTCGCCGTCTCCAATGGGCGGCA
GCGCCTACTATTGGGATCTCTTCAACATGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5675.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis