Browse Element(s) Details


OsAffx.5680.1.S1_at

Description tigr:9636.m00118
TID=OsAffx.5680.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0219010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02140Os.10262.1.S1_at11/118+709296..713823U-box domain containing protein, expressed
LOC_Os08g02150Os.57291.1.S1_at7/118+714171..715518expressed protein
LOC_Os08g02160OsAffx.16786.1.S1_at11/118+725881..728248No apical meristem protein, expressed
LOC_Os08g02170Os.51205.1.S1_at11/118+728293..729317expressed protein
LOC_Os08g02180Os.52993.1.S1_at11/118+728348..728904expressed protein
LOC_Os08g02190OsAffx.5680.1.S1_at10/118+732945..739124expressed protein
LOC_Os08g02190Os.27946.1.S1_at1/118+732945..739124expressed protein
LOC_Os08g02200Os.51266.1.S1_at11/118+740152..740787expressed protein
LOC_Os08g02210Os.10410.1.S1_at11/118+744994..746908expressed protein
LOC_Os08g02220Os.54829.1.S1_at11/118+756868..758778Endoglucanase 1 precursor, putative, expressed
LOC_Os08g02230Os.27067.2.A1_at11/118+761993..764528plant-specific FAD-dependent oxidoreductase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5680.1.S1_at--404--1711Chr08:737273..737297 (25 bp)
ACCACGGCAGGCTTGTATATTCTAC
LOC_Os08g02190
OsAffx.5680.1.S1_at--768--631Chr08:737245..737269 (25 bp)
ATGCTTCAACTTGCAGTGGGTGCCT
LOC_Os08g02190
OsAffx.5680.1.S1_at--810--10071Chr08:737210..737234 (25 bp)
TAGTGGGCTTCGTTGTGCATGGATT
LOC_Os08g02190
OsAffx.5680.1.S1_at--1149--131Chr08:737188..737212 (25 bp)
ATTAGCAACTTGATTTCGGCCCTTG
LOC_Os08g02190
OsAffx.5680.1.S1_at--1034--4311Chr08:737168..737192 (25 bp)
CCTTGCCTCATCAATGTTCTATTTC
LOC_Os08g02190
OsAffx.5680.1.S1_at--698--6851Chr08:737001..737025 (25 bp)
GTTTGATTCCTTCTGGCTGATGACA
LOC_Os08g02190
OsAffx.5680.1.S1_at--728--6091Chr08:736970..736994 (25 bp)
GAGTCAATGTCCCTTCTTGGAAGTC
LOC_Os08g02190
OsAffx.5680.1.S1_at--357--2891Chr08:736910..736934 (25 bp)
AAGGGATTTCTGCTACCCTATGCAT
LOC_Os08g02190
OsAffx.5680.1.S1_at--1038--631Chr08:736819..736843 (25 bp)
ATGCATCTGTCATTGGGAGCTACCA
LOC_Os08g02190
OsAffx.5680.1.S1_at--568--751NONE
ATGTCTTCAGAGCTCCTTTTCAGAA
NONE
OsAffx.5680.1.S1_at--948--7651Chr08:735708..735732 (25 bp)
GGGATCGCTTTATCAATTGTGGCTT
LOC_Os08g02190
Target Sequence 
ACCACGGCAGGCTTGTATATTCTACTGGATGCTTCAACTTGCAGTGGGTGCCTTGAAGAGTTTTAGTGGGCTTCGTTGTG
CATGGATTAGCAACTTGATTTCGGCCCTTGCCTCATCAATGTTCTATTTCTGTTTCGAGACATGGTTTGTGGTGGAGCAT
GAGAAGCAAGGTCAGAAGCAAGATTTGCTGTTTGATTCCTTCTGGCTGATGACATTCTTTGAGTCAATGTCCCTTCTTGG
AAGTCAAGGAATTACAAATCTATTGGTTAATGATGATGACAAGGGATTTCTGCTACCCTATGCATTTGCAGCTTTACTAT
CAATAGTTGGTCTTCTATATATCAGAAAAAATGCACCAAGTACTACTCATCATGCATCTGTCATTGGGAGCTACCAAAAA
TCATTTTTTGCTCATGTCTTCAGAGCTCCTTTTCAGAATGAGGACAGCCTAACGATAGCATATGTTACTGTGGGGATCGC
TTTATCAATTGTGGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5680.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis