Browse Element(s) Details


OsAffx.5685.1.S1_at

Description tigr:9636.m00161
TID=OsAffx.5685.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0262011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g02560OsAffx.16793.1.S1_at11/118+1050028..1053386hypothetical protein
LOC_Os08g02570OsAffx.28991.1.S1_at11/118+1055977..1059449hypothetical protein
LOC_Os08g02580OsAffx.28992.1.S1_at10/118+1062365..1065127hypothetical protein
LOC_Os08g02590OsAffx.28993.1.S1_at11/118+1067826..1068158expressed protein
LOC_Os08g02600OsAffx.5684.1.S1_at11/118+1068948..1069730expressed protein
LOC_Os08g02610NANA8+1075664..1076215hypothetical protein
LOC_Os08g02620OsAffx.5685.1.S1_at11/118+1077800..1080313hypothetical protein
LOC_Os08g02630Os.51086.1.S1_x_at11/118+1083391..1084388expressed protein
LOC_Os08g02640Os.5499.3.S1_a_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.2.S1_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02640Os.5499.4.S1_x_at11/118+1084809..1088345Succinate dehydrogenase iron-sulfur protein,mitochondrial precursor, putative, expressed
LOC_Os08g02650OsAffx.28995.1.S1_at11/118+1092332..1092919hypothetical protein
LOC_Os08g02660Os.52238.1.S1_at2/118+1100424..1101227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g02670Os.6822.1.S1_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_s_at11/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed
LOC_Os08g02670Os.38507.1.S1_at2/118+1104970..1109435DNA polymerase III, delta subunit family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5685.1.S1_at--20--7531Chr08:1079866..1079890 (25 bp)
GGGCGGGAGCGGTGGGTGTACTGTA
LOC_Os08g02620
OsAffx.5685.1.S1_at--936--7711Chr08:1079853..1079877 (25 bp)
GGGTGTACTGTAGCAGCTCGTCCCC
LOC_Os08g02620
OsAffx.5685.1.S1_at--427--8751Chr08:1079850..1079874 (25 bp)
TGTACTGTAGCAGCTCGTCCCCGAG
LOC_Os08g02620
OsAffx.5685.1.S1_at--39--8351Chr08:1079408..1079431 (24 bp)
GGCTGTTCGCGAAGCGGATCCGGTG
LOC_Os08g02620
OsAffx.5685.1.S1_at--46--7311Chr08:1078022..1078046 (25 bp)
GTGCTGGTTGTCGTTGAGAGATTTA
LOC_Os08g02620
OsAffx.5685.1.S1_at--621--6051Chr08:1078005..1078029 (25 bp)
GAGATTTAATATTGGCTTCTCCACA
LOC_Os08g02620
OsAffx.5685.1.S1_at--298--10871Chr08:1077994..1078018 (25 bp)
TTGGCTTCTCCACAAAATAGGGCAA
LOC_Os08g02620
OsAffx.5685.1.S1_at--1064--3091Chr08:1077979..1078003 (25 bp)
AATAGGGCAAAATCATCTTCCATTA
LOC_Os08g02620
OsAffx.5685.1.S1_at--852--8231Chr08:1077974..1077998 (25 bp)
GGCAAAATCATCTTCCATTATTTGT
LOC_Os08g02620
OsAffx.5685.1.S1_at--1071--111Chr08:1077963..1077987 (25 bp)
CTTCCATTATTTGTAAAGAACCAGT
LOC_Os08g02620
OsAffx.5685.1.S1_at--292--2751Chr08:1077948..1077972 (25 bp)
AAGAACCAGTAATGCCTTATTTGGG
LOC_Os08g02620
Target Sequence 
GGGCGGGAGCGGTGGGTGTACTGTAGCAGCTCGTCCCCGAGCGCGACGACCACCACCACCACCACGACGTCGTCCTCGTG
CTCCTCCGCGGCGAGCACGGGCGCCTCAAGCGGCGGCGCCGCGGCGCGGTCGCTGCTGCTGAAGCTCGACTACGAGGAGA
TCCTCGCCGCCTGGGCGGGCCGCGGCTCGCTCTACATCGGCGGCGCCGCCGCCGCCACCGCCGGTGGCACGGACAACGCC
GCGGCGGAGCTGGAGCTCGACTCCGTGTTCGTCGAGGTGTCGGCGTCGCCTGAGCCCGCGGCGGCGGCGGCGGCATGGAG
CGTGGCGGAGCCGGCGGCGAGGGCGGAGAAGGTGAGGCGGTACAAGGAGAAGCGGCAGGGGCGGCTGTTCGCGAAGCGGA
TCCGGTGCTGGTTGTCGTTGAGAGATTTAATATTGGCTTCTCCACAAAATAGGGCAAAATCATCTTCCATTATTTGTAAA
GAACCAGTAATGCCTTATTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis