Browse Element(s) Details


OsAffx.5689.1.S1_at

Description tigr:9636.m00215
TID=OsAffx.5689.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0308010/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g03030OsAffx.29006.1.S1_at10/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03030OsAffx.21754.1.S1_x_at2/118+1344344..1351636retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g03040NANA8+1358627..1359473lectin protein kinase, putative
LOC_Os08g03050OsAffx.16800.1.S1_at11/118+1361372..1361578hypothetical protein
LOC_Os08g03060NANA8+1362595..1362822hypothetical protein
LOC_Os08g03070Os.54803.1.S1_at11/118+1364705..1367435Legume lectins beta domain containing protein, expressed
LOC_Os08g03070OsAffx.29007.1.S1_at1/118+1364705..1367435Legume lectins beta domain containing protein, expressed
LOC_Os08g03080OsAffx.5689.1.S1_at10/118+1370733..1379852Zinc knuckle family protein
LOC_Os08g03080OsAffx.9652.1.S1_x_at1/118+1370733..1379852Zinc knuckle family protein
LOC_Os08g03090NANA8+1385439..1387438Protein kinase domain containing protein
LOC_Os08g03100OsAffx.29006.2.S1_at4/118+1396657..1399395Protein kinase domain containing protein
LOC_Os08g03100Os.50872.1.S1_at3/118+1396657..1399395Protein kinase domain containing protein
LOC_Os08g03100OsAffx.29006.3.S1_x_at1/118+1396657..1399395Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5689.1.S1_at--789--7331Chr08:1376159..1376183 (25 bp)
GTGCAGGTACATCCTACAGGGAAAC
LOC_Os08g03080
OsAffx.5689.1.S1_at--398--2411Chr08:1376203..1376227 (25 bp)
AAACACGAGGAGTCATCATCATCAA
LOC_Os08g03080
OsAffx.5689.1.S1_at--591--2711Chr08:1376288..1376312 (25 bp)
AAGCACCACGACACAACACAGGAGG
LOC_Os08g03080
OsAffx.5689.1.S1_at--333--2471NONE
AACACAGGAGGTATGCCATGTTTGA
NONE
OsAffx.5689.1.S1_at--795--4352Chr08:1377690..1377714 (25 bp)
CCAAGCTCCACATACTAAACCTTAG
LOC_Os08g03080
OsAffx.5689.1.S1_at--12--5231Chr08:1377720..1377740 (21 bp)
GAATCAACAAGGTTACTTTGGGCAA
LOC_Os08g03080
OsAffx.5689.1.S1_at--177--7832Chr08:1377904..1377928 (25 bp)
GGTAAAGCAATGTCTCGCGGGAATC
LOC_Os08g03080
OsAffx.5689.1.S1_at--682--5591Chr08:1379559..1379583 (25 bp)
GAAATACCAACACGTACTGTCGGCC
LOC_Os08g03080
OsAffx.5689.1.S1_at--146--8171Chr08:1379647..1379671 (25 bp)
GGAACTTGATCTACGCCGGCAGCGA
LOC_Os08g03080
OsAffx.5689.1.S1_at--534--6312Chr08:1379670..1379694 (25 bp)
GATGACCAGTCGAGGCAGAGAGCCA
LOC_Os08g03080
OsAffx.5689.1.S1_at--620--5391Chr08:1379721..1379745 (25 bp)
GAAGCTGCTCGGTGGGAAATCCCGA
LOC_Os08g03080
Target Sequence 
GTGCAGGTACATCCTACAGGGAAACACGCAACAAACCAAGGCAAAAACACGAGGAGTCATCATCATCAACACCCATGCAG
ATGTACGAGGCGGACTGGGAACCAACGGGGGATGCACCCGGTTGGACCCAAGCACCACGACACAACACAGGAGGTATGCC
ATGTTTGATCCCTACCAAGCTCCACATACTAAACCTTAGAGTAGGAATCAACAAGGTTACTTTGGGCAAGGTAAAGCAAT
GTCTCGCGGGAATCAGGTGTAAGGAAATACCAACACGTACTGTCGGCCGGCGACGGCGGCGACACGAGGAGAATCTCCAC
GCTCGGCTTGGCGATGAGGTGGGAAGGAGGGGGAACTTGATCTACGCCGGCAGCGATGACCAGTCGAGGCAGAGAGCCAA
GACGCAGCAGCTGAGGTCCGCGGATGAAGCTGCTCGGTGGGAAATCCCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5689.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis