Browse Element(s) Details


OsAffx.5701.1.S1_at

Description tigr:9636.m00374
TID=OsAffx.5701.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0449011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g04450Os.5754.1.S1_at11/118+2171814..2173858DAG protein, chloroplast precursor, putative, expressed
LOC_Os08g04460Os.9162.1.S1_at11/118+2176426..2178461NADPH-dependent FMN reductase family protein, expressed
LOC_Os08g04470OsAffx.5699.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04470Os.54040.1.S1_at11/118+2189097..2190635U-box domain containing protein, expressed
LOC_Os08g04480OsAffx.5700.1.S1_x_at11/118+2197103..2197961hypothetical protein
LOC_Os08g04490OsAffx.5701.1.S1_at11/118+2198769..2203345hypothetical protein
LOC_Os08g04500Os.57569.2.A1_s_at11/118+2203682..2207548Terpene synthase family, metal binding domain containing protein, expressed
LOC_Os08g04510OsAffx.22848.3.S1_x_at3/118+2212585..2218544retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g04520Os.13877.1.S1_at6/118+2225597..2229850hypothetical protein
LOC_Os08g04520OsAffx.11193.1.S1_x_at2/118+2225597..2229850hypothetical protein
LOC_Os08g04520OsAffx.28592.1.S1_at1/118+2225597..2229850hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5701.1.S1_at--141--5411Chr08:2202049..2202073 (25 bp)
GAAGCTCGTCCTTGATAAGCTACTA
LOC_Os08g04490
OsAffx.5701.1.S1_at--408--4851Chr08:2202067..2202215 (25 bp)
GCTACTACAGGTGCTGATCAGCGAT
LOC_Os08g04490
OsAffx.5701.1.S1_at--730--291Chr08:2202214..2202238 (25 bp)
ATAGCATTCAGCGTGCCGGTTTCAT
LOC_Os08g04490
OsAffx.5701.1.S1_at--689--4731Chr08:2202243..2202267 (25 bp)
GCTGTCCTTGCTTGGCATATTGCGA
LOC_Os08g04490
OsAffx.5701.1.S1_at--108--231Chr08:2202259..2202283 (25 bp)
ATATTGCGACGGACATATCCTTCTT
LOC_Os08g04490
OsAffx.5701.1.S1_at--303--2711Chr08:2202366..2202390 (25 bp)
AAGCATGGCATCCTATCTGGCAATG
LOC_Os08g04490
OsAffx.5701.1.S1_at--182--2771Chr08:2202442..2202466 (25 bp)
AAGACCGCCAGGAAGCTCTAGATCA
LOC_Os08g04490
OsAffx.5701.1.S1_at--530--2551Chr08:2202509..2202533 (25 bp)
AACTGAGGATTTCGAGCACCCAAGA
LOC_Os08g04490
OsAffx.5701.1.S1_at--388--8271Chr08:2202542..2202566 (25 bp)
GGCAGTTGAGCCTGTGTTAATCCAA
LOC_Os08g04490
OsAffx.5701.1.S1_at--655--9871Chr08:2202657..2202681 (25 bp)
TACATGGCATTTCACTGCGGACCTG
LOC_Os08g04490
OsAffx.5701.1.S1_at--1051--3931Chr08:2202674..2202698 (25 bp)
CGGACCTGGTTTCCACATTAAGCAG
LOC_Os08g04490
Target Sequence 
GAAGCTCGTCCTTGATAAGCTACTACAGGTGCTGATCAGCGATAGCATTCAGCGTGCCGGTTTCATGTCTGCTGTCCTTG
CTTGGCATATTGCGACGGACATATCCTTCTTCCATGAAGATGAGCTAGGCTGCAGCTCTCCATCCAGAGGTCCAAGCAGA
GAACTATCTAAATATGTCATGTACCTTTCTGCAAAGCATGGCATCCTATCTGGCAATGATGGGCACATGCGGCTTAGAAA
TGCTCAGGAATTCATCGTTGAATGTCTGGAAGACCGCCAGGAAGCTCTAGATCAAGATGCTGTTGTCAGAAGTGTAGCTG
CAAAGATAGATAATCTAACTGAGGATTTCGAGCACCCAAGAATACTGACGGCAGTTGAGCCTGTGTTAATCCAAAGTGGC
CAACTTGCCAAGGAGCTGCTTAAGATGAAAGAAGCAAATGATCGATGGGATATCATCATGAATGTTTGGATGGAGATGCT
TTGCTACATGGCATTTCACTGCGGACCTGGTTTCCACATTAAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5701.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis