Browse Element(s) Details


OsAffx.5737.1.S1_x_at

Description tigr:9636.m00670
TID=OsAffx.5737.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to Mla1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0733011/11NB-ARC domain containing protein, expressed
LOC_Os08g073401/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g07300Os.6557.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300OsAffx.29076.1.S1_s_at11/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07300Os.53790.1.S1_at10/118+4072322..4082539haloacid dehalogenase-like hydrolase family protein, putative, expressed
LOC_Os08g07320OsAffx.29078.1.S1_at11/118+4092169..4095042expressed protein
LOC_Os08g07330OsAffx.5737.1.S1_x_at11/118+4099054..4103614NB-ARC domain containing protein, expressed
LOC_Os08g07340OsAffx.5737.3.S1_at11/118+4105524..4109073NB-ARC domain containing protein
LOC_Os08g07340OsAffx.5737.1.S1_x_at1/118+4105524..4109073NB-ARC domain containing protein
LOC_Os08g07350Os.26886.2.S1_s_at3/118+4111657..4112034hypothetical protein
LOC_Os08g07350Os.26886.6.S1_s_at2/118+4111657..4112034hypothetical protein
LOC_Os08g07360Os.26886.3.S1_x_at6/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g07360Os.26886.1.S1_x_at5/118+4112233..4117415transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g07370OsAffx.16873.1.S1_at11/118+4120724..4122411RGH1A, putative
LOC_Os08g07380Os.49373.1.S1_at1/118+4126151..4137217retrotransposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5737.1.S1_x_at--41--4531Chr08:4103043..4103067 (25 bp)
GCCGCTTGTGTTTGGTATGCATCGA
LOC_Os08g07330
OsAffx.5737.1.S1_x_at--1020--9051Chr08:4103060..4103084 (25 bp)
TGCATCGAGTTTTCCAGATTGCCTG
LOC_Os08g07330
OsAffx.5737.1.S1_x_at--454--1251Chr08:4103075..4103099 (25 bp)
AGATTGCCTGCTTGGATTAACTCGT
LOC_Os08g07330
OsAffx.5737.1.S1_x_at--1149--9191Chr08:4103107..4103131 (25 bp)
TCCAAACCTCTCCTTTATAAACGTG
LOC_Os08g07330
OsAffx.5737.1.S1_x_at--69--5531Chr08:4103162..4103186 (25 bp)
GAAACCCTTGGGATGTTGCCAGAAC
LOC_Os08g07330
OsAffx.5737.1.S1_x_at--385--3571Chr08:4103237..4103261 (25 bp)
CATACTGGCAATGGTGGCTACTTCC
LOC_Os08g07330
OsAffx.5737.1.S1_x_at--7--6871Chr08:4103302..4103326 (25 bp)
GTTTGATCTGAGTTGCTGCGACTGC
LOC_Os08g07330
OsAffx.5737.1.S1_x_at--807--571Chr08:4103354..4103378 (25 bp)
ATGCCAAGCCTCGAAACCTTTGAGA
LOC_Os08g07330
OsAffx.5737.1.S1_x_at--352--8871Chr08:4103380..4103404 (25 bp)
TGATGTCCATGTGCGGTTCCTAGAA
LOC_Os08g07330
OsAffx.5737.1.S1_x_at--50--1452Chr08:4108901..4108925 (25 bp)
AGAACCTCCCTAGTTCGCTAAAGAG
LOC_Os08g07340
OsAffx.5737.1.S1_x_at--740--3051Chr08:4103479..4103503 (25 bp)
AATCTGTTGCCGAGATGCCTGTGAT
LOC_Os08g07330
Target Sequence 
GCCGCTTGTGTTTGGTATGCATCGAGTTTTCCAGATTGCCTGCTTGGATTAACTCGTCAGCTCTTCCAAACCTCTCCTTT
ATAAACGTGACAGTGCAGGTTATCCAGGAGCAGGACATGGAAACCCTTGGGATGTTGCCAGAACTATATTGCCTAAAATT
GTACTCGCGTTACACAAACGTAGTTAGCATTAAGCATACTGGCAATGGTGGCTACTTCCAGAAGTTGAAATCCTTCAAGA
TTGTTGGCTCATCAGTCCGGTTTGATCTGAGTTGCTGCGACTGCAGTGGTGGTGAGATAAAATCTTCTTTCATGCCAAGC
CTCGAAACCTTTGAGACTGATGTCCATGTGCGGTTCCTAGAAGATGCGAACATGCTTGGTTTCGACAAGCTTGGCTTGGA
GAACCTCCCTAGTTCGCTAAAGAGAATCATTGTTGTAATCTGTTGCCGAGATGCCTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5737.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis