Browse Element(s) Details


OsAffx.5813.1.S1_x_at

Description tigr:9636.m01434
TID=OsAffx.5813.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=plasma-membrane proton-efflux P-type ATPase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1436011/11expressed protein
LOC_Os06g083102/11ATPase 8, plasma membrane-type, putative, expressed
LOC_Os05g255502/11ATPase 7, plasma membrane-type, putative, expressed
LOC_Os02g554001/11ATPase 8, plasma membrane-type, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g14330Os.39978.1.S1_at11/118+8582702..8588027Possible apospory-associated protein C, putative, expressed
LOC_Os08g14340NANA8+8591905..8596146retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g14350OsAffx.29196.1.S1_at11/118+8598664..8599374hypothetical protein
LOC_Os08g14360OsAffx.5813.1.S1_x_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.55633.1.A1_at11/118+8607417..8609356expressed protein
LOC_Os08g14360Os.8093.2.S1_x_at1/118+8607417..8609356expressed protein
LOC_Os08g14364Os.54755.1.S1_at9/118+8609377..8611503expressed protein
LOC_Os08g14370NANA8+8617303..8618016hypothetical protein
LOC_Os08g14380NANA8+8619306..8619608hypothetical protein
LOC_Os08g14390OsAffx.16993.1.S1_at11/118+8624616..8630059expressed protein
LOC_Os08g14400Os.55010.1.S1_at10/118+8632850..8634403Homeobox domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009935biological_processnutrient import
GO:0015992biological_processproton transport
GO:0005886cellular_componentplasma membrane
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
GO:0008553molecular_functionhydrogen-exporting ATPase activity, phosphorylative mechanism
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5813.1.S1_x_at--128--1053Chr08:8608580..8608604 (25 bp)
AGGTGAGCATCATCAGCCAGGCGCT
LOC_Os08g14360
OsAffx.5813.1.S1_x_at--911--394Chr02:33928610..33928634 (25 bp)
ATCAGCCAGGCGCTCATCTTCGTGA
LOC_Os02g55400
OsAffx.5813.1.S1_x_at--663--9611Chr08:8608334..8608356 (23 bp)
TCATCGCGACGCTGGTGACGGTGTA
LOC_Os08g14360
OsAffx.5813.1.S1_x_at--1084--3891Chr08:8608323..8608347 (25 bp)
CTGGTGACGGTGTACGCCACCTTGG
LOC_Os08g14360
OsAffx.5813.1.S1_x_at--803--7672Chr02:33175350..33175630 (25 bp)
GGGTTCGCCCACATCAAGGGCATCG
NONE
OsAffx.5813.1.S1_x_at--106--8651Chr08:8608174..8608197 (24 bp)
TGGGACACCCTCATCGAGCACAAGA
LOC_Os08g14360
OsAffx.5813.1.S1_x_at--197--5951Chr08:8608068..8608182 (25 bp)
GAGCACAAGATTGCCTTCACGAGCA
LOC_Os08g14360
OsAffx.5813.1.S1_x_at--54--4851Chr08:8607920..8607944 (25 bp)
GCTACAGGGAGCTCTCGGAGATCGC
LOC_Os08g14360
OsAffx.5813.1.S1_x_at--644--1571Chr08:8607854..8607878 (25 bp)
AGCTCAGCACGCTCAAGGGCCAGAT
LOC_Os08g14360
OsAffx.5813.1.S1_x_at--12--9731Chr08:8607842..8607866 (25 bp)
TCAAGGGCCAGATGGAGTCCACCGT
LOC_Os08g14360
OsAffx.5813.1.S1_x_at--594--8551Chr08:8607830..8607854 (25 bp)
TGGAGTCCACCGTCAGGCTCAAGGG
LOC_Os08g14360
Target Sequence 
AGGTGAGCATCATCAGCCAGGCGCTCATCTTCGTGACGCGCTCCCGCAGCTGGTGCTTCGTCGAGCGCCCCGGCATGCTG
CTCTGCGGCGCCTTCGTCGCCGCGCAGATCATCGCGACGCTGGTGACGGTGTACGCCACCTTGGGGTTCGCCCACATCAA
GGGCATCGGCTGGGGGTGGGCCGGCGTCATCTGGCTCTACAGCATCGTCACCTTCCTCCCCCTCGACATCTTCAAGTTCG
CCGTCCGCTACGCCCTCAGCGGCCGCGCCTGGGACACCCTCATCGAGCACAAGATTGCCTTCACGAGCAAGAAGGATTAC
GGGAGAGGGGAGAGGGAGGCGCAGTGGGCGACGGCGCAGAGGACGCTGCACGGGCTGCAGACGCCGGAGATGGGGGACCA
CCTCGGCGGCGTCGGCGGCGGCGAGCGGAGCAGCTACAGGGAGCTCTCGGAGATCGCCGAGCAGGCCAAGCGCCGCGCCG
AGGTGGCCCGGCTGCGCGAGCTCAGCACGCTCAAGGGCCAGATGGAGTCCACCGTCAGGCTCAAGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5813.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis