Browse Element(s) Details


OsAffx.5837.1.S1_at

Description tigr:9636.m01608
TID=OsAffx.5837.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1602011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16000Os.52731.1.S1_at1/118+9740606..9747593retrotransposon protein, putative, unclassified
LOC_Os08g16010Os.9922.1.S1_s_at11/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16010OsAffx.29229.1.S1_at10/118+9751198..9754319acetyltransferase, GNAT family protein, expressed
LOC_Os08g16020OsAffx.5837.1.S1_at11/118+9765124..9766412hypothetical protein
LOC_Os08g16030OsAffx.29230.1.S1_at10/118+9773858..9775641expressed protein
LOC_Os08g16040NANA8+9777088..9777372hypothetical protein
LOC_Os08g16050Os.5486.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16050OsAffx.29231.1.S1_at11/118+9777747..9780579Tetraspanin family protein, expressed
LOC_Os08g16060OsAffx.17019.1.S1_at11/118+9786247..9788173hypothetical protein
LOC_Os08g16070OsAffx.17020.1.S1_at11/118+9789087..9792238NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5837.1.S1_at--934--8071Chr08:9765173..9765194 (22 bp)
GGAGCTCAGAATTAGATACAGGCAA
LOC_Os08g16020
OsAffx.5837.1.S1_at--1045--3251Chr08:9765585..9765609 (25 bp)
CAAAATTCCTGCTTCCAAACCGGTG
LOC_Os08g16020
OsAffx.5837.1.S1_at--632--2371Chr08:9765601..9765625 (25 bp)
AAACCGGTGCCATTCAGACACAACA
LOC_Os08g16020
OsAffx.5837.1.S1_at--739--10531Chr08:9765613..9765637 (25 bp)
TTCAGACACAACACCAACAGTAATT
LOC_Os08g16020
OsAffx.5837.1.S1_at--981--3431Chr08:9765630..9765654 (25 bp)
CAGTAATTCTGTACCAAATCCTGGA
LOC_Os08g16020
OsAffx.5837.1.S1_at--610--531Chr08:9765647..9765671 (25 bp)
ATCCTGGATCCAAGACCGGTAAATC
LOC_Os08g16020
OsAffx.5837.1.S1_at--391--9811Chr08:9765666..9765690 (25 bp)
TAAATCGGACGATTACCGTTGCGAG
LOC_Os08g16020
OsAffx.5837.1.S1_at--216--9911Chr08:9765679..9765703 (25 bp)
TACCGTTGCGAGATGGGAACCCTAT
LOC_Os08g16020
OsAffx.5837.1.S1_at--1087--791Chr08:9765691..9765715 (25 bp)
ATGGGAACCCTATTGTCGCTGTACT
LOC_Os08g16020
OsAffx.5837.1.S1_at--196--7231Chr08:9765705..9766062 (25 bp)
GTCGCTGTACTTGCAACAGGAGTGT
LOC_Os08g16020
OsAffx.5837.1.S1_at--643--7371Chr08:9766091..9766115 (25 bp)
GTGACTCACCAATTCTACTGCAGAT
LOC_Os08g16020
Target Sequence 
GGAGCTCAGAATTAGATACAGGCAAAATTCCTGCTTCCAAACCGGTGCCATTCAGACACAACACCAACAGTAATTCTGTA
CCAAATCCTGGATCCAAGACCGGTAAATCGGACGATTACCGTTGCGAGATGGGAACCCTATTGTCGCTGTACTTGCAACA
GGAGTGTGACAAACACAGGAAAGAACAAGAAGAAGGTGACTCACCAATTCTACTGCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5837.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis