Browse Element(s) Details


OsAffx.5842.1.S1_at

Description tigr:9636.m01654
TID=OsAffx.5842.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to NBS-LRR disease resistance protein homologue
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g1646011/11NB-ARC domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g16430OsAffx.5840.1.S1_x_at11/118+10045182..10046685cytochrome P450, putative
LOC_Os08g16430OsAffx.5840.1.S1_at11/118+10045182..10046685cytochrome P450, putative
LOC_Os08g16440OsAffx.29313.1.S1_at1/118+10061926..10063600transposon protein, putative, Mutator sub-class
LOC_Os08g16450OsAffx.5841.1.S1_at11/118+10065520..10065849NBS-LRR disease resistance protein, putative
LOC_Os08g16460OsAffx.5842.1.S1_at11/118+10071081..10075054NB-ARC domain containing protein
LOC_Os08g16470Os.27458.1.A1_at3/118+10079140..10081794expressed protein
LOC_Os08g16480Os.14911.1.S1_at11/118+10088535..10098829ATPase, AFG1 family protein, expressed
LOC_Os08g16480Os.47481.1.S1_at1/118+10088535..10098829ATPase, AFG1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5842.1.S1_at--148--31Chr08:10074028..10074052 (25 bp)
ATTGGACTTCAAGGGCTGACCGACT
LOC_Os08g16460
OsAffx.5842.1.S1_at--888--7571Chr08:10074040..10074064 (25 bp)
GGGCTGACCGACTTTTGGAGGACAA
LOC_Os08g16460
OsAffx.5842.1.S1_at--22--6931Chr08:10074122..10074146 (25 bp)
GTATGATAGCACAACCTTCCCAACT
LOC_Os08g16460
OsAffx.5842.1.S1_at--519--7871Chr08:10074148..10074172 (25 bp)
GGTTTGTAGGCATCTCACATCATCT
LOC_Os08g16460
OsAffx.5842.1.S1_at--686--8391Chr08:10074321..10074345 (25 bp)
GGCGCATTCCGCAAACTGAAAGTCT
LOC_Os08g16460
OsAffx.5842.1.S1_at--564--3851Chr08:10074336..10074360 (25 bp)
CTGAAAGTCTTCACCTTGAGGGATA
LOC_Os08g16460
OsAffx.5842.1.S1_at--34--6731Chr08:10074422..10074446 (25 bp)
GTTCATGTTCCCTATGCTAGTTACA
LOC_Os08g16460
OsAffx.5842.1.S1_at--825--5911Chr08:10074456..10074480 (25 bp)
GAGCTTTGTCCAATGCTTAGACTGA
LOC_Os08g16460
OsAffx.5842.1.S1_at--960--9991Chr08:10074473..10074497 (25 bp)
TAGACTGAAACTATGCCCACCGATG
LOC_Os08g16460
OsAffx.5842.1.S1_at--1093--6271Chr08:10074494..10074518 (25 bp)
GATGTTTCACAGCTGGCTCATATCA
LOC_Os08g16460
OsAffx.5842.1.S1_at--1056--5591Chr08:10074975..10074995 (21 bp)
GACAAGGCTGTCGACACGGGTTTAA
LOC_Os08g16460
Target Sequence 
ATTGGACTTCAAGGGCTGACCGACTTTTGGAGGACAAGGATGTTTTGGGAGAACTAATGCCACCAAGAGGTCTGTGGAAT
TTAAGCATACAAGGGTATGATAGCACAACCTTCCCAACTTGGTTTGTAGGCATCTCACATCATCTTCCAAGTCTTGTTAA
GATTGAGTTGAAGGATTTGCACAGATGCAGACACCTGCCACCACTGGGACAGTTGCCAAACCTGAATGAAGTGCATCTCC
AACAGATGGACAGTCTCACAAAAATTGATGGCGGTTTCTGCGGTGGCGACAAAGGCGCATTCCGCAAACTGAAAGTCTTC
ACCTTGAGGGATATGAAACAGTTGGAAGAGTGGAGCACCACAACACACAGTAAAGGTGGTGAGGATAGCATAGAGTTCAT
GTTCCCTATGCTAGTTACACTGTCAATAGAGCTTTGTCCAATGCTTAGACTGAAACTATGCCCACCGATGTTTCACAGCT
GGCTCATATCAGAGAGCGACAAGGCTGTCGACACGGGTTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5842.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis