Browse Element(s) Details


OsAffx.5949.1.S1_at

Description tigr:9636.m02690
TID=OsAffx.5949.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2722011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27170OsAffx.5948.1.S1_at11/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27170Os.16047.1.S1_at1/118+16460368..16463347calmodulin-binding protein, putative
LOC_Os08g27180Os.45976.1.S1_x_at3/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27180Os.45976.1.S1_at2/118+16464739..16471417transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g27190OsAffx.17182.1.S1_at11/118+16478119..16478981F-box domain containing protein
LOC_Os08g27200OsAffx.17183.1.S1_at6/118+16483581..16484332hypothetical protein
LOC_Os08g27210OsAffx.17184.1.S1_at11/118+16486485..16487024hypothetical protein
LOC_Os08g27210Os.43876.2.S1_x_at1/118+16486485..16487024hypothetical protein
LOC_Os08g27220OsAffx.5949.1.S1_at11/118+16487328..16488266AP2 domain containing protein
LOC_Os08g27230NANA8+16488851..16489342hypothetical protein
LOC_Os08g27240Os.47452.1.A1_at7/118+16494729..16500531expressed protein
LOC_Os08g27250Os.54554.1.S1_at11/118+16506958..16509404expressed protein
LOC_Os08g27260OsAffx.29379.1.S1_at11/118+16512898..16513149hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5949.1.S1_at--1034--8511Chr08:16487860..16487884 (25 bp)
TGGACTTCCGGGACAGCCAGCTCAA
LOC_Os08g27220
OsAffx.5949.1.S1_at--111--5651Chr08:16487849..16487873 (25 bp)
GACAGCCAGCTCAAGGTCCGGCAAT
LOC_Os08g27220
OsAffx.5949.1.S1_at--735--1851Chr08:16487782..16487806 (25 bp)
ACGACGCCTTCGAGGTGCAGGTCCG
LOC_Os08g27220
OsAffx.5949.1.S1_at--116--3991Chr08:16487688..16487712 (25 bp)
CGTCAAGATCCAACTACCGGCGCCG
LOC_Os08g27220
OsAffx.5949.1.S1_at--325--5791Chr08:16487607..16487631 (25 bp)
GACGACGACGGAATCATTATCGCAA
LOC_Os08g27220
OsAffx.5949.1.S1_at--784--5231Chr08:16487597..16487621 (25 bp)
GAATCATTATCGCAAGTGACGGCCT
LOC_Os08g27220
OsAffx.5949.1.S1_at--653--4011Chr08:16487488..16487512 (25 bp)
CGTTCGTCGTCGATACATTCCTGGG
LOC_Os08g27220
OsAffx.5949.1.S1_at--584--9311Chr08:16487395..16487419 (25 bp)
TCCCGCTGCCGTTCTTGGATGACAA
LOC_Os08g27220
OsAffx.5949.1.S1_at--1064--4771Chr08:16487391..16487415 (25 bp)
GCTGCCGTTCTTGGATGACAACGAC
LOC_Os08g27220
OsAffx.5949.1.S1_at--1006--6311Chr08:16487378..16487402 (25 bp)
GATGACAACGACATGGACTTCAAGC
LOC_Os08g27220
OsAffx.5949.1.S1_at--589--1851Chr08:16487371..16487395 (25 bp)
ACGACATGGACTTCAAGCTCAGCGA
LOC_Os08g27220
Target Sequence 
TGGACTTCCGGGACAGCCAGCTCAAGGTCCGGCAATGGCTCGGCACGTTCCCCTCCGAGGAGGAGGCCAGGGCCGCCTAC
GACGCCTTCGAGGTGCAGGTCCGCGCCTCCCTGTCCCGCGGCGGCGCCGGCGCCTCCTCCCCCGCCGTCGCCATCGCGCC
GTCACCTGCCCGCGTCAAGATCCAACTACCGGCGCCGCGGCGTGCATCTGGCCGCCGGAAGAAGACGCAGACGACGGCGA
CGGTGACGACAACGACGACGACGGAATCATTATCGCAAGTGACGGCCTCATCAGCGTCCCCGTCGTCCAAGGAGGCGCCG
CCGCCGTCGTCGTCAGCTTCTGCCGCGACGCCGCCGCCGCTGAATCCGCCGCCGTTCGTCGTCGATACATTCCTGGGGGA
GGATGACCACCTCGCCGCCGACGAGGATGACCGCTTCGGCTTCGGCCTCGCCGATCTTGGGCACCTCCCGCTGCCGTTCT
TGGATGACAACGACATGGACTTCAAGCTCAGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5949.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis