Browse Element(s) Details


OsAffx.5959.1.S1_x_at

Description tigr:9636.m02754
TID=OsAffx.5959.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g278609/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g27840Os.6248.1.S1_s_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.10454.1.S1_a_at11/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27840Os.45901.1.S1_x_at2/118+16831868..16837720Phosphoenolpyruvate carboxylase 2, putative, expressed
LOC_Os08g27850Os.7897.1.S1_at11/118+16849431..16852585Endothelial differentiation-related factor 1, putative, expressed
LOC_Os08g27860Os.11625.1.S1_at11/118+16855631..16858524expressed protein
LOC_Os08g27860OsAffx.5959.1.S1_x_at9/118+16855631..16858524expressed protein
LOC_Os08g27870OsAffx.29387.1.S1_at11/118+16861751..16864039hypothetical protein
LOC_Os08g27880OsAffx.17197.1.S1_at11/118+16864916..16865233hypothetical protein
LOC_Os08g27890NANA8+16868352..16870074retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900Os.53142.1.S1_at3/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.27522.1.S1_x_at2/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.16187.1.S1_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27900OsAffx.3613.1.S1_x_at1/118+16872318..16877980retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g27910NANA8+16881750..16883183retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009648biological_processphotoperiodism
GO:0009909biological_processregulation of flower development
GO:0042753biological_processpositive regulation of circadian rhythm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5959.1.S1_x_at--59--3651Chr08:16855993..16856017 (25 bp)
CTTCGATTTGTGGTTCTTGCTGCCA
LOC_Os08g27860
OsAffx.5959.1.S1_x_at--160--3831NONE
CTGCCAGGGTCGTGGTGCGAATCAA
NONE
OsAffx.5959.1.S1_x_at--10--2751Chr08:16856705..16856729 (25 bp)
AAGAAGTGGAAACCTCCACCCATCG
LOC_Os08g27860
OsAffx.5959.1.S1_x_at--504--491Chr08:16856726..16856750 (25 bp)
ATCGCTCATCTTCACGCGGTTAAGG
LOC_Os08g27860
OsAffx.5959.1.S1_x_at--885--7351NONE
GTGAAAATGGAGAGCGAGCGATCAA
NONE
OsAffx.5959.1.S1_x_at--738--951Chr08:16857830..16857854 (25 bp)
AGGACAGCGTCATCAGCAACGGCGG
LOC_Os08g27860
OsAffx.5959.1.S1_x_at--256--171Chr08:16857982..16858006 (25 bp)
ATTTTGGAGCAGAACCGTGTGCTGA
LOC_Os08g27860
OsAffx.5959.1.S1_x_at--113--5451Chr08:16857993..16858017 (25 bp)
GAACCGTGTGCTGATCCAGGAGATC
LOC_Os08g27860
OsAffx.5959.1.S1_x_at--880--1271Chr08:16858013..16858037 (25 bp)
AGATCAGCCAGAACCATGAGGCCCG
LOC_Os08g27860
OsAffx.5959.1.S1_x_at--680--7451Chr08:16858100..16858124 (25 bp)
GTGTCGTCGATCTCTACGCTAATCT
LOC_Os08g27860
OsAffx.5959.1.S1_x_at--270--4791Chr08:16858156..16858180 (25 bp)
GCTGCCAGCGCCAATAACACCAATG
LOC_Os08g27860
Target Sequence 
CTTCGATTTGTGGTTCTTGCTGCCAGGGTCGTGGTGCGAATCAAGAAGTGGAAACCTCCACCCATCGCTCATCTTCACGC
GGTTAAGGCAATTATGGAAATGTTATGGTGGTATAATAACGGTTACAAGGTGAAAATGGAGAGCGAGCGATCAAATCAGG
GGATAATGGAGGAGGACAGCGTCATCAGCAACGGCGGCAGGGAGGAGGAGGTGGTGGTTGCGAACGGCAGTGGCGGAGGG
GTAGGGGGGACGGCGAGGAGCAGCGGTGGGGGAGGGGGGAAGGTGGTGCAGGTGCTGCAGAGGAACTTTGGCGAGGTGCA
GGGGATTTTGGAGCAGAACCGTGTGCTGATCCAGGAGATCAGCCAGAACCATGAGGCCCGCGACGCCGATGGCCTCACCC
GCAACGTCGCCCTCATCCGGGAGCTCAACACCAACATCGCCCGTGTCGTCGATCTCTACGCTAATCTCTCCGGCTCCTTC
TCCCGCTCTGTCACTGCCGCTGCCAGCGCCAATAACACCAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5959.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis