Browse Element(s) Details


OsAffx.5980.1.S1_at

Description tigr:9636.m02956
TID=OsAffx.5980.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g297409/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29710Os.21565.1.S1_at11/118+18110740..18116601beta 1,3-glycosyltransferase-like protein I, putative, expressed
LOC_Os08g29720Os.9525.1.S1_a_at11/118+18119155..18124666Mitochondrial carrier protein, expressed
LOC_Os08g29720Os.9525.3.S1_at11/118+18119155..18124666Mitochondrial carrier protein, expressed
LOC_Os08g29730Os.8737.1.S1_at11/118+18132809..18136710expressed protein
LOC_Os08g29740OsAffx.5980.1.S1_at9/118+18138427..18140983hypothetical protein
LOC_Os08g29750OsAffx.29424.1.S1_at10/118+18150187..18151176hypothetical protein
LOC_Os08g29750Os.27362.1.S1_at1/118+18150187..18151176hypothetical protein
LOC_Os08g29760Os.18220.1.S1_at11/118+18159012..18166880expressed protein
LOC_Os08g29760Os.12400.2.S1_x_at1/118+18159012..18166880expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5980.1.S1_at--404--4351Chr08:18140868..18140892 (25 bp)
CCAGGGAGCAAGAGGTTATCAGCGT
LOC_Os08g29740
OsAffx.5980.1.S1_at--590--971Chr08:18140841..18140865 (25 bp)
AGGAGCTTGTGGAACTTGAGAGTAT
LOC_Os08g29740
OsAffx.5980.1.S1_at--848--2331NONE
AAAGAGGAGCGCCAGCACTGCGCGT
NONE
OsAffx.5980.1.S1_at--570--2611Chr08:18139967..18139987 (21 bp)
AACCCAGTGGCGAGCAACCCAACAG
LOC_Os08g29740
OsAffx.5980.1.S1_at--191--8391Chr08:18139959..18139983 (25 bp)
GGCGAGCAACCCAACAGTGAGCGCT
LOC_Os08g29740
OsAffx.5980.1.S1_at--645--2611Chr08:18139952..18139976 (25 bp)
AACCCAACAGTGAGCGCTGCTTCGC
LOC_Os08g29740
OsAffx.5980.1.S1_at--778--10631Chr08:18139932..18139956 (25 bp)
TTCGCCCATCGCACGTCGAGTCGTG
LOC_Os08g29740
OsAffx.5980.1.S1_at--762--9371Chr08:18139917..18139941 (25 bp)
TCGAGTCGTGGTCCTCCTGAAGGTT
LOC_Os08g29740
OsAffx.5980.1.S1_at--438--4671NONE
GCGGGCGGCGCAAGGTCTGTGAGAG
NONE
OsAffx.5980.1.S1_at--374--4112Chr05:6652791..6652811 (21 bp)
CGCAAGGTCTGTGAGAGACTTGAGA
NONE
OsAffx.5980.1.S1_at--996--1392Chr05:6652802..6652826 (25 bp)
AGACTTGAGAGTTTAGAGCTAGTAG
NONE
Target Sequence 
CCAGGGAGCAAGAGGTTATCAGCGTGGAGGAGCTTGTGGAACTTGAGAGTATTATTGGAAGGGAAAAAAAAGAGGAGCGC
CAGCACTGCGCGTGCCCTGCTCTGGCGCGGATGCGCAACCCCCACCCCCAACCCAGTGGCGAGCAACCCAACAGTGAGCG
CTGCTTCGCCCATCGCACGTCGAGTCGTGGTCCTCCTGAAGGTTGGGGAGGCCGGAAGGTTGGGGAGAGGAGGGGTGGTG
GTGTTAGCGGGCGGCGCAAGGTCTGTGAGAGACTTGAGAGTTTAGAGCTAGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5980.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis