Browse Element(s) Details


OsAffx.6026.1.S1_at

Description tigr:9636.m03506
TID=OsAffx.6026.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3493011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g34890NANA8+21834571..21836926F-box domain containing protein
LOC_Os08g34900Os.20317.1.S1_at11/118+21845226..21848724Pectinesterase PPE8B precursor, putative, expressed
LOC_Os08g34910Os.9647.1.S1_at11/118+21848769..21851212Pectinesterase-3 precursor, putative, expressed
LOC_Os08g34920OsAffx.29518.1.S1_at11/118+21854331..21857002hypothetical protein
LOC_Os08g34930OsAffx.6026.1.S1_at11/118+21858873..21859433hypothetical protein
LOC_Os08g34940NANA8+21866134..21866391hypothetical protein
LOC_Os08g34950Os.27526.1.S1_s_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34950Os.53739.1.S1_x_at11/118+21868685..21879039phosphatidylinositol-4-phosphate 5-kinase family protein, putative, expressed
LOC_Os08g34960OsAffx.17339.1.S1_at11/118+21879775..21880377Myb-like DNA-binding domain containing protein
LOC_Os08g34970Os.24582.1.S1_at11/118+21880977..21891814Sec34-like family protein, expressed
LOC_Os08g34970Os.55324.1.S1_at3/118+21880977..21891814Sec34-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6026.1.S1_at--598--9351Chr08:21858904..21858928 (25 bp)
TCGCATCCTTGCGTTGGAGACCAAG
LOC_Os08g34930
OsAffx.6026.1.S1_at--280--3991Chr08:21858936..21858960 (25 bp)
CGTGTTGGCGGTTGCCTCCTTGAGC
LOC_Os08g34930
OsAffx.6026.1.S1_at--962--10811Chr08:21858940..21858964 (25 bp)
TTGGCGGTTGCCTCCTTGAGCTCGA
LOC_Os08g34930
OsAffx.6026.1.S1_at--607--2371Chr08:21858969..21858993 (25 bp)
AAACGCTCCAACATCCTTGTGCCGG
LOC_Os08g34930
OsAffx.6026.1.S1_at--855--4371Chr08:21858976..21859000 (25 bp)
CCAACATCCTTGTGCCGGAGGATGA
LOC_Os08g34930
OsAffx.6026.1.S1_at--148--691Chr08:21858997..21859021 (25 bp)
ATGAGGAGGAGATGCACATCGACAG
LOC_Os08g34930
OsAffx.6026.1.S1_at--570--1551Chr08:21859047..21859071 (25 bp)
AGCTTCCCTGCATTGGAGGCTGCCG
LOC_Os08g34930
OsAffx.6026.1.S1_at--395--10651Chr08:21859050..21859073 (24 bp)
TTCCCTGCATTGGAGGCTGCCGAGC
LOC_Os08g34930
OsAffx.6026.1.S1_at--1020--9171Chr08:21859369..21859388 (20 bp)
TGCCGAGCTGCCTCTGTGCAAGCTT
LOC_Os08g34930
OsAffx.6026.1.S1_at--855--1591Chr08:21859369..21859393 (25 bp)
AGCTGCCTCTGTGCAAGCTTCGGCT
LOC_Os08g34930
OsAffx.6026.1.S1_at--437--9471Chr08:21859376..21859400 (25 bp)
TCTGTGCAAGCTTCGGCTCTGCCAC
LOC_Os08g34930
Target Sequence 
TCGCATCCTTGCGTTGGAGACCAAGGAGGAGGCGTGTTGGCGGTTGCCTCCTTGAGCTCGAGCTCAAACGCTCCAACATC
CTTGTGCCGGAGGATGAGGAGGAGATGCACATCGACAGCCGCCTCCTCGAGCGCGAGCTTTGCAGCTTCCCTGCATTGGA
GGCTGCCGAGCTGCCTCTGTGCAAGCTTCGGCTCTGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6026.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis