Browse Element(s) Details


OsAffx.6067.1.S1_x_at

Description tigr:9636.m03871
TID=OsAffx.6067.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3843011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38380OsAffx.17399.2.S1_at11/118+24165537..24167260RNA recognition motif family protein
LOC_Os08g38400Os.8615.1.S1_at11/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38400Os.50452.2.S1_x_at1/118+24178302..24181973Oligopeptide transporter 5, putative, expressed
LOC_Os08g38410Os.26860.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38410Os.53794.1.S1_at11/118+24180502..24185908RNA recognition motif family protein, expressed
LOC_Os08g38420OsAffx.17401.1.S1_at11/118+24188202..24188492hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_x_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38430OsAffx.6067.1.S1_at11/118+24191589..24192401hypothetical protein
LOC_Os08g38440OsAffx.17402.1.S1_at11/118+24193968..24199447C2 domain containing protein, expressed
LOC_Os08g38450NANA8+24200711..24201460hypothetical protein
LOC_Os08g38460Os.52151.1.S1_at11/118+24203170..24204185Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g38470OsAffx.17404.2.S1_at11/118+24213862..24215185F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6067.1.S1_x_at--1040--1451Chr08:24191880..24192363 (25 bp)
AGAAGAGGAGCCCAAGTTCTACTTG
LOC_Os08g38430
OsAffx.6067.1.S1_x_at--1065--5331Chr08:24191879..24192362 (25 bp)
GAAGAGGAGCCCAAGTTCTACTTGG
LOC_Os08g38430
OsAffx.6067.1.S1_x_at--149--6192Chr01:16371890..16371989 (25 bp)
GAGGAGCCCAAGTTCTACTTGGACA
NONE
OsAffx.6067.1.S1_x_at--768--1971Chr08:24191731..24191755 (25 bp)
ACTTCAGAGATAAGCCTACGAAAAC
LOC_Os08g38430
OsAffx.6067.1.S1_x_at--403--9791Chr08:24191721..24191745 (25 bp)
TAAGCCTACGAAAACCCCATATGGT
LOC_Os08g38430
OsAffx.6067.1.S1_x_at--65--2771Chr08:24191629..24191653 (25 bp)
AAGACTACCATGTTGCCGACTACAT
LOC_Os08g38430
OsAffx.6067.1.S1_x_at--165--1411Chr08:24191628..24191652 (25 bp)
AGACTACCATGTTGCCGACTACATG
LOC_Os08g38430
OsAffx.6067.1.S1_x_at--303--5711Chr08:24191627..24191651 (25 bp)
GACTACCATGTTGCCGACTACATGA
LOC_Os08g38430
OsAffx.6067.1.S1_x_at--1056--9971Chr08:24191624..24191648 (25 bp)
TACCATGTTGCCGACTACATGATGA
LOC_Os08g38430
OsAffx.6067.1.S1_x_at--545--731Chr08:24191620..24191644 (25 bp)
ATGTTGCCGACTACATGATGATACT
LOC_Os08g38430
OsAffx.6067.1.S1_x_at--241--8811Chr08:24191619..24191643 (25 bp)
TGTTGCCGACTACATGATGATACTT
LOC_Os08g38430
Target Sequence 
AGAAGAGGAGCCCAAGTTCTACTTGGACAAGGGGACACCTATGGGTATAAATACAAACCCCCTAGGAGGAGAGGGGACAC
AGAACAATAGATCAAGACACAAGATCAACATACAAGCCAACATACGTCAAGACAAGACGCCGGATATCGACTTCAGAGAT
AAGCCTACGAAAACCCCATATGGTACCTACGGGAACCAAAGAGAGGAATCTAGCGCTATCTCTGATCTCGCCGGGTACGG
ATTCGAGGAGGAAGACTACCATGTTGCCGACTACATGATGATACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6067.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis