Browse Element(s) Details


OsAffx.6120.1.S1_x_at

Description tigr:9636.m04383
TID=OsAffx.6120.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=similar to the myc family of helix-loop-helix transcription factors
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g4307011/11Helix-loop-helix DNA-binding domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g43030Os.2741.4.S1_x_at2/118+27066547..27067545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g43040Os.15257.1.S1_at11/118+27069428..27072050Transferase family protein, expressed
LOC_Os08g43050Os.49522.1.S1_at10/118+27073030..27077088NB-ARC domain containing protein, expressed
LOC_Os08g43060Os.10140.1.S1_at11/118+27077595..27084173expressed protein
LOC_Os08g43070OsAffx.6120.1.S1_x_at11/118+27090325..27091116Helix-loop-helix DNA-binding domain containing protein
LOC_Os08g43080OsAffx.29641.1.S1_at11/118+27096403..27096899DNA polymerase delta subunit 4 family, putative
LOC_Os08g43090Os.15927.1.S1_s_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43090Os.57534.1.S1_x_at11/118+27104459..27108600bZIP protein, putative, expressed
LOC_Os08g43100OsAffx.17489.1.S1_at11/118+27114050..27114385hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009611biological_processresponse to wounding
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0045941biological_processpositive regulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6120.1.S1_x_at--1078--8171Chr08:27090857..27090881 (25 bp)
GGAAGCCAGGGCCACGCTCCGGCGG
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--43--8071Chr08:27090784..27090808 (25 bp)
GGAGAAGCTCAACCGCCGGTTCTGC
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--806--9151Chr08:27090743..27090767 (25 bp)
TGCCCACCGTGTCACGGATGGACAA
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--1063--4231Chr08:27090737..27090761 (25 bp)
CCGTGTCACGGATGGACAAGGCGTC
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--1137--4491Chr08:27090699..27090723 (25 bp)
GCCGTTGACTACATCGCCGAGCTGC
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--461--4331Chr08:27090575..27090599 (25 bp)
CCATCGGCCGGGATGATCTCGTGGT
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--535--6291Chr08:27090547..27090571 (25 bp)
GATGATCGGGCGTGACGCCGCCATA
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--343--5811Chr08:27090534..27090558 (25 bp)
GACGCCGCCATACTGCGCCTGACGA
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--776--8871Chr08:27090473..27090497 (25 bp)
TGATGTGCGCGGTGCGGGCGCTGAA
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--555--7571Chr08:27090458..27090482 (25 bp)
GGGCGCTGAACCTGGCGGTGCAGCA
LOC_Os08g43070
OsAffx.6120.1.S1_x_at--320--3491Chr08:27090399..27090423 (25 bp)
CAGGACGTGATGGTGGACGACGTGC
LOC_Os08g43070
Target Sequence 
GGAAGCCAGGGCCACGCTCCGGCGGCGGCGGCGCGCCCCCGATCGGCCACGTGGAGGCCGAGCGGCAGCGGAGGGAGAAG
CTCAACCGCCGGTTCTGCGAACTCCGCGCCGCCGTGCCCACCGTGTCACGGATGGACAAGGCGTCCCTCCTCGCCGACGC
CGTTGACTACATCGCCGAGCTGCGCCGCCGCGTCGAGCGGCTCGAGGCCGAGGCGCGGAGGGCGCCGCTGGCTCCCTCCG
CTGCCGCCGCCGCCGCCTGGGCCGCGGGGCTGGGCGCCGGCGCCATCGGCCGGGATGATCTCGTGGTGCGGATGATCGGG
CGTGACGCCGCCATACTGCGCCTGACGACGGCGGCGGCGGCGGCGCGGCACGCCCCGGCGCGCATGATGTGCGCGGTGCG
GGCGCTGAACCTGGCGGTGCAGCACGCGTCGGTGGCGCGCGTGGGCGGCGCGACGGTGCAGGACGTGATGGTGGACGACG
TGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6120.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis