Browse Element(s) Details


OsAffx.6161.1.S1_x_at

Description tigr:9637.m00164
TID=OsAffx.6161.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0190011/11hypothetical protein
LOC_Os09g0321010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g01820Os.3430.1.S1_at11/115+470301..472374Cytochrome b5, putative, expressed
LOC_Os05g01830OsAffx.26681.1.S1_at11/115+474913..476128hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_x_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.2.S1_at10/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_at6/115+477136..478482hypothetical protein
LOC_Os05g01840OsAffx.29799.1.S1_x_at5/115+477136..478482hypothetical protein
LOC_Os05g01850NANA5+479406..482265transposon protein, putative, Mutator sub-class
LOC_Os05g01860OsAffx.4227.1.S1_at11/115+483690..484081hypothetical protein
LOC_Os05g01870NANA5+485034..485393hypothetical protein
LOC_Os05g01880NANA5+486781..487428hypothetical protein
LOC_Os05g01890OsAffx.26683.1.S1_x_at10/115+487822..488308hypothetical protein
LOC_Os05g01900OsAffx.6161.1.S1_x_at11/115+492152..494080hypothetical protein
LOC_Os05g01900OsAffx.6161.1.S1_s_at11/115+492152..494080hypothetical protein
LOC_Os05g01910OsAffx.26684.1.S1_at10/115+494994..500963BPM, putative, expressed
LOC_Os05g01920NANA5+506831..507046Subtilisin-chymotrypsin inhibitor CI-1B, putative
LOC_Os05g01930OsAffx.30633.1.S1_at1/115+507554..509173hypothetical protein
LOC_Os05g01940Os.6261.1.S1_at10/115+515991..517710Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g01940OsAffx.18117.1.S1_x_at2/115+515991..517710Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6161.1.S1_x_at--746--1191Chr05:493148..493510 (25 bp)
AGTTATCCAGTCAGAGAATGAAAAT
LOC_Os05g01900
OsAffx.6161.1.S1_x_at--381--2032Chr09:1547783..1547807 (25 bp)
AAATATAATTCTCACGGGCCCAACT
LOC_Os09g03210
OsAffx.6161.1.S1_x_at--180--3012Chr09:1547784..1547808 (25 bp)
AATATAATTCTCACGGGCCCAACTA
LOC_Os09g03210
OsAffx.6161.1.S1_x_at--196--232Chr09:1547785..1547809 (25 bp)
ATATAATTCTCACGGGCCCAACTAG
LOC_Os09g03210
OsAffx.6161.1.S1_x_at--142--372Chr09:1547787..1547811 (25 bp)
ATAATTCTCACGGGCCCAACTAGAG
LOC_Os09g03210
OsAffx.6161.1.S1_x_at--259--9672Chr09:1547794..1547818 (25 bp)
TCACGGGCCCAACTAGAGGAATTGT
LOC_Os09g03210
OsAffx.6161.1.S1_x_at--1139--3312Chr09:1547795..1547819 (25 bp)
CACGGGCCCAACTAGAGGAATTGTT
LOC_Os09g03210
OsAffx.6161.1.S1_x_at--602--4552Chr09:1547800..1547824 (25 bp)
GCCCAACTAGAGGAATTGTTTTCCA
LOC_Os09g03210
OsAffx.6161.1.S1_x_at--1014--4372Chr09:1547802..1547826 (25 bp)
CCAACTAGAGGAATTGTTTTCCATG
LOC_Os09g03210
OsAffx.6161.1.S1_x_at--866--1212Chr09:1548149..1548173 (25 bp)
AGTTATGCAACTGCTGCGACGTGTT
LOC_Os09g03210
OsAffx.6161.1.S1_x_at--55--10112Chr09:1548244..1548268 (25 bp)
TATCCAGTCGCACTTTGAGGTTCAC
LOC_Os09g03210
Target Sequence 
AGTTATCCAGTCAGAGAATGAAAATATAATTCTCACGGGCCCAACTAGAGGAATTGTTTTCCATGNTNNNATCTTTTTTG
AGATAAATTTGAAGATTAAGGAANATGAAGAGTGCAATGACAANGAATTTAGTAAAGGNTTGCTTGAGATGAAGNTTNAC
ACTCGTAAGTCTANGATTGTGAGTGAAACCTTNGAGAGTAGGCTCAGTGAGGTGGANCTNGTATCTGCTTNTGTTAAGGA
AGCCNTGGAGGGCACTGTNGAGATCANNATTCTGTCAGGNCCTNAAGTTTTTCATGGAAAAATTANTGCTTGCACAACAG
ATGTTNCNAATNATATTNTACTGTATGATAGNNATGTTNNTGNTGCAACNNCAGTNGGNGATGACAGAGTTATGCAACTG
CTGCGACGTGTTGTAGNAGTATCAGNAAATGAGATNTTGATACTGAATATTNANGCCCATAATATTCATCNGAATGATAA
NNTATCCAGTCGCACTTTGAGGTTCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6161.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis