Browse Element(s) Details


OsAffx.6195.1.S1_at

Description tigr:9637.m00545
TID=OsAffx.6195.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0781010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g07770OsAffx.19796.1.S1_x_at2/119+3930419..3931151hypothetical protein
LOC_Os09g07780Os.40577.1.S1_at10/119+3934220..3937411PPR986-12, putative, expressed
LOC_Os09g07790NANA9+3942821..3943273hypothetical protein
LOC_Os09g07800Os.32502.1.S1_at11/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07800Os.50043.1.A1_at1/119+3948848..3952247C2 domain-containing protein, putative, expressed
LOC_Os09g07810OsAffx.6195.1.S1_at10/119+3955029..3956133hypothetical protein
LOC_Os09g07820OsAffx.6196.1.S1_at11/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07820Os.16226.1.S1_s_at10/119+3958894..39638943' exoribonuclease family, domain 2 containing protein, expressed
LOC_Os09g07830Os.12579.1.S1_at10/119+3969052..3974826Acetyl-CoA acetyltransferase, cytosolic 1, putative, expressed
LOC_Os09g07840OsAffx.22403.1.S1_at1/119+3977157..3979103retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6195.1.S1_at--123--4251Chr09:3955916..3955940 (25 bp)
CCGTCTTAGCGCCTTGATTATAACT
LOC_Os09g07810
OsAffx.6195.1.S1_at--456--8471Chr09:3955708..3955841 (25 bp)
TGGCCCTTTAGGCAGGATGCCACAT
LOC_Os09g07810
OsAffx.6195.1.S1_at--859--3311Chr09:3955677..3955701 (25 bp)
CACATTCAGCATTCACGTGATGGTG
LOC_Os09g07810
OsAffx.6195.1.S1_at--334--251Chr09:3955624..3955648 (25 bp)
ATATGTTGGTAGTGGCGCCAAGCTC
LOC_Os09g07810
OsAffx.6195.1.S1_at--920--3231Chr09:3955606..3955630 (25 bp)
CAAGCTCGAGTATGTCCGTGGCAGC
LOC_Os09g07810
OsAffx.6195.1.S1_at--346--9291Chr09:3955592..3955616 (25 bp)
TCCGTGGCAGCCATGAAGTGGTCAT
LOC_Os09g07810
OsAffx.6195.1.S1_at--932--9372Chr09:3955535..3955559 (25 bp)
TCGAGCTTGAGAGTATGCCGACGGT
LOC_Os09g07810
OsAffx.6195.1.S1_at--800--1471NONE
AGAATTCATCGTGGCTTGACTCGGG
NONE
OsAffx.6195.1.S1_at--1056--7451Chr09:3955171..3955195 (25 bp)
GTGTGCCGACGGCTGCCACAAAGAA
LOC_Os09g07810
OsAffx.6195.1.S1_at--550--4431Chr09:3955146..3955170 (25 bp)
GCCATCAGTGTATAGGCGCTGCGGA
LOC_Os09g07810
OsAffx.6195.1.S1_at--699--6331Chr09:3955101..3955125 (25 bp)
GATGCCGAGCTCGTGGTTACTAGAC
LOC_Os09g07810
Target Sequence 
CCGTCTTAGCGCCTTGATTATAACTTGGGAAGAAATTGATATGGATGGGATGATGACCAGAAGAAGCAGTGGACAAATCA
AAGTTCACATATATTTGTATGGCCCTTTAGGCAGGATGCCACATATACATCACATTCAGCATTCACGTGATGGTGTTGGT
GTCGGTAGTGGTGCTGAGCTTGAATATGTTGGTAGTGGCGCCAAGCTCGAGTATGTCCGTGGCAGCCATGAAGTGGTCAT
CAGTGAGAGCACGAATGGCATCGGTGGTGGCGTCGAGCTTGAGAGTATGCCGACGGTGGTCATGAAGAATTCATCGTGGC
TTGACTCGGGGAGTGTGCCGACGGCTGCCACAAAGAAGCCATCAGTGTATAGGCGCTGCGGAGTGATAGAGACACCGATG
GGGATGCCGAGCTCGTGGTTACTAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6195.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis