Browse Element(s) Details


OsAffx.6289.1.S1_at

Description tigr:9637.m01318
TID=OsAffx.6289.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1585011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g15820Os.9769.1.S1_at11/119+9654423..9658103Aldose 1-epimerase family protein, expressed
LOC_Os09g15830OsAffx.29863.1.S1_at10/119+9660772..9661911hypothetical protein
LOC_Os09g15840Os.57109.1.S1_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_x_at11/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.1.S1_at10/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840OsAffx.17950.1.S1_at8/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.24761.1.A1_at3/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15840Os.28346.5.S1_x_at1/119+9662733..9676305retrotransposon protein, putative, unclassified, expressed
LOC_Os09g15850OsAffx.6289.1.S1_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.1.A1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15850Os.9606.2.S1_s_at11/119+9680879..9688737Leucine Rich Repeat family protein, expressed
LOC_Os09g15860OsAffx.17723.1.S1_at11/119+9692656..9694069expressed protein
LOC_Os09g15870NANA9+9697514..9697813hypothetical protein
LOC_Os09g15880NANA9+9704395..9705944retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g15890Os.46862.1.S1_at5/119+9709204..9711070retrotransposon protein, putative, unclassified
LOC_Os09g15890Os.47130.4.A1_x_at4/119+9709204..9711070retrotransposon protein, putative, unclassified
LOC_Os09g15890OsAffx.28575.1.S1_at1/119+9709204..9711070retrotransposon protein, putative, unclassified
LOC_Os09g15900Os.28943.1.S1_x_at3/119+9712598..9715502retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6289.1.S1_at--1061--8791Chr09:9687118..9687142 (25 bp)
TGTTCTTTGATCAAGCCTGCTGAAG
LOC_Os09g15850
OsAffx.6289.1.S1_at--228--10791Chr09:9687124..9687148 (25 bp)
TTGATCAAGCCTGCTGAAGTGCTGA
LOC_Os09g15850
OsAffx.6289.1.S1_at--383--10371Chr09:9687153..9687177 (25 bp)
TTTTCATCCCTCAAGGAAGTCCCCT
LOC_Os09g15850
OsAffx.6289.1.S1_at--856--5271Chr09:9687168..9687192 (25 bp)
GAAGTCCCCTCGTTTTCCATATCAT
LOC_Os09g15850
OsAffx.6289.1.S1_at--675--4191Chr09:9687174..9687198 (25 bp)
CCCTCGTTTTCCATATCATTCAAAT
LOC_Os09g15850
OsAffx.6289.1.S1_at--308--171Chr09:9687239..9687263 (25 bp)
ATATATCACTCCACAGAAATTAGTT
LOC_Os09g15850
OsAffx.6289.1.S1_at--448--3411Chr09:9687252..9687276 (25 bp)
CAGAAATTAGTTTAAATCGGCGTAT
LOC_Os09g15850
OsAffx.6289.1.S1_at--808--1491Chr09:9687292..9687316 (25 bp)
AGCAAATATGACTGTGAATAGCGCA
LOC_Os09g15850
OsAffx.6289.1.S1_at--145--3091Chr09:9687308..9687332 (25 bp)
AATAGCGCACATATTCACAATCGTA
LOC_Os09g15850
OsAffx.6289.1.S1_at--685--3191Chr09:9687325..9687349 (25 bp)
CAATCGTATTTGTTTATGCTGTTTC
LOC_Os09g15850
OsAffx.6289.1.S1_at--65--6831Chr09:9687336..9687360 (25 bp)
GTTTATGCTGTTTCAACTTGTATAA
LOC_Os09g15850
Target Sequence 
TGTTCTTTGATCAAGCCTGCTGAAGTGCTGATACATTTTCATCCCTCAAGGAAGTCCCCTCGTTTTCCATATCATTCAAA
TAATCTTTAAAAGAAAGTAAAAATGTAGACAAAACATAATGATATATCACTCCACAGAAATTAGTTTAAATCGGCGTATA
CAACTTTTTTAAAAAGCAAATATGACTGTGAATAGCGCACATATTCACAATCGTATTTGTTTATGCTGTTTCAACTTGTA
TAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6289.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis