Browse Element(s) Details


OsAffx.6296.1.S1_at

Description tigr:9637.m01359
TID=OsAffx.6296.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g1626011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g16210OsAffx.17735.1.S1_at11/119+9896097..9897478hypothetical protein
LOC_Os09g16220OsAffx.17736.1.S1_at11/119+9899753..9903720hypothetical protein
LOC_Os09g16230OsAffx.29870.1.S1_at11/119+9908175..9908868hypothetical protein
LOC_Os09g16240OsAffx.6295.1.S1_at11/119+9909745..9916710expressed protein
LOC_Os09g16240OsAffx.18675.1.A1_at1/119+9909745..9916710expressed protein
LOC_Os09g16250OsAffx.17737.1.S1_at11/119+9918342..9918698hypothetical protein
LOC_Os09g16260OsAffx.6296.1.S1_at11/119+9921133..9923650hypothetical protein
LOC_Os09g16270OsAffx.6297.1.S1_at11/119+9927174..9927782hypothetical protein
LOC_Os09g16280Os.52894.1.S1_at11/119+9932450..9933161expressed protein
LOC_Os09g16290OsAffx.29871.3.S1_at11/119+9944092..9952453ABC transporter family protein
LOC_Os09g16290Os.55739.1.S1_x_at1/119+9944092..9952453ABC transporter family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6296.1.S1_at--828--10371Chr09:9921704..9921728 (25 bp)
TTTTCACCCCACCTGCTAGTAATAA
LOC_Os09g16260
OsAffx.6296.1.S1_at--200--10051Chr09:9921688..9921712 (25 bp)
TAGTAATAACATCCCTTGTGCTCCC
LOC_Os09g16260
OsAffx.6296.1.S1_at--49--4432Chr07:28772126..28772382 (25 bp)
GCCATTTGCTCCTCTTGAACAGATG
NONE
OsAffx.6296.1.S1_at--1080--7811Chr09:9921600..9921624 (25 bp)
GGTACTCCACAGATGGTGCCGGTTT
LOC_Os09g16260
OsAffx.6296.1.S1_at--270--7291Chr09:9921585..9921609 (25 bp)
GTGCCGGTTTTTCCTCATGAACAGA
LOC_Os09g16260
OsAffx.6296.1.S1_at--198--9971Chr09:9921544..9921568 (25 bp)
TACCCCAGTACATATGCCATTTCAT
LOC_Os09g16260
OsAffx.6296.1.S1_at--721--6831Chr09:9921475..9921499 (25 bp)
GTTTCTTCCCCGTGAACAGATGCAA
LOC_Os09g16260
OsAffx.6296.1.S1_at--518--851Chr09:9921375..9921399 (25 bp)
ATGGCATATCTTCCACCTGAACAGA
LOC_Os09g16260
OsAffx.6296.1.S1_at--356--8811Chr09:9921340..9921364 (25 bp)
TGTTCCAATTGTACACACACCATCT
LOC_Os09g16260
OsAffx.6296.1.S1_at--691--9711Chr09:9921285..9921309 (25 bp)
TCAATATCCAGCTCTAATCCTGTGC
LOC_Os09g16260
OsAffx.6296.1.S1_at--536--7311Chr09:9921264..9921288 (25 bp)
GTGCTGCAAAATGGGCTTTACTCGA
LOC_Os09g16260
Target Sequence 
TTTTCACCCCACCTGCTAGTAATAACATCCCTTGTGCTCCCCACCATCACTATATGCTGCATGCGCCATTTGCTCCTCTT
GAACAGATGCAGTGGCGCCATCCTGGTACTCCACAGATGGTGCCGGTTTTTCCTCATGAACAGATACAGTGGCGCCATCC
TACCCCAGTACATATGCCATTTCATCCCCATGAACAGATGCAATGCCGCCAATCCCCTGCACCAATGCCGTTTCTTCCCC
GTGAACAGATGCAATGGCGCCATCCCGCTGCACCAATGCCAACATTTCCTCCCCATGAACAGATGCAATGGCATAATCCT
GTTGCACAGATGGCATATCTTCCACCTGAACAGATGCAACGGAATGTTCCAATTGTACACACACCATCTGAAATGATGCA
AATGTGGCAGCTTCCTCAATCAATATCCAGCTCTAATCCTGTGCTGCAAAATGGGCTTTACTCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6296.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis