Browse Element(s) Details


OsAffx.6386.1.S1_at

Description tigr:9637.m02103
TID=OsAffx.6386.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=SET domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g2453011/11Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g24490NANA9+14582905..14585280Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os09g24500OsAffx.30002.1.S1_at11/119+14598025..14599146hypothetical protein
LOC_Os09g24510OsAffx.17875.1.S1_at11/119+14601760..14603777hypothetical protein
LOC_Os09g24520Os.57398.1.S1_at11/119+14602950..14606124pentatricopeptide, putative, expressed
LOC_Os09g24530OsAffx.6386.1.S1_at11/119+14606620..14608847Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative, expressed
LOC_Os09g24540Os.12380.1.S1_at11/119+14609815..14612265PPIC-type PPIASE domain containing protein, expressed
LOC_Os09g24550OsAffx.17876.1.S1_at11/119+14615985..14616249hypothetical protein
LOC_Os09g24560OsAffx.30003.1.S1_s_at11/119+14616938..14618006No apical meristem protein
LOC_Os09g24560OsAffx.13887.1.S1_at1/119+14616938..14618006No apical meristem protein
LOC_Os09g24570Os.52370.1.S1_at11/119+14628692..14631858PsRT17-1 like protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0030785molecular_function[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6386.1.S1_at--1087--1631Chr09:14607264..14607288 (25 bp)
AGCGCTTGATTATGGTTTCACCGAA
LOC_Os09g24530
OsAffx.6386.1.S1_at--690--7651Chr09:14607226..14607250 (25 bp)
GGGATGCATATACTCTGACCTTGGA
LOC_Os09g24530
OsAffx.6386.1.S1_at--302--231Chr09:14607121..14607145 (25 bp)
ATATTGTCCTTGGTGAATCTCTTCC
LOC_Os09g24530
OsAffx.6386.1.S1_at--246--2291Chr09:14607091..14607115 (25 bp)
AAATGCTACCTTACCTGCGATTACT
LOC_Os09g24530
OsAffx.6386.1.S1_at--616--4951Chr09:14607047..14607071 (25 bp)
GCATTTCTCTTGGAAGCACTCTTCA
LOC_Os09g24530
OsAffx.6386.1.S1_at--658--7551Chr09:14607009..14607033 (25 bp)
GGGCCACCTTGAACTGCCAGTGAGT
LOC_Os09g24530
OsAffx.6386.1.S1_at--627--5411Chr09:14606972..14606996 (25 bp)
GAAGCGATATGTCAGGTCATCCGAA
LOC_Os09g24530
OsAffx.6386.1.S1_at--885--7811Chr09:14606958..14606982 (25 bp)
GGTCATCCGAAATGCCTGCAAATCT
LOC_Os09g24530
OsAffx.6386.1.S1_at--984--7771Chr09:14606927..14606951 (25 bp)
GGTGCTTACCACACTACCATAGAAG
LOC_Os09g24530
OsAffx.6386.1.S1_at--839--1691Chr09:14606777..14606801 (25 bp)
AGCCAAGGCTTCAAATTGCCGTTGA
LOC_Os09g24530
OsAffx.6386.1.S1_at--105--5471Chr09:14606688..14606712 (25 bp)
GAACTGGATGGCCTAGAGTACTACC
LOC_Os09g24530
Target Sequence 
AGCGCTTGATTATGGTTTCACCGAATCAAATTCATCAAGGGATGCATATACTCTGACCTTGGAGATATCTGAATCTGATC
CATTTTATGATGACAAGCTTGACATTGCAGAGCTAAATGGGATGGGGGAGACTGCATACTTTGATATTGTCCTTGGTGAA
TCTCTTCCTCCTCAAATGCTACCTTACCTGCGATTACTCTGCCTTGGGGGAACAGATGCATTTCTCTTGGAAGCACTCTT
CAGAAATGCTGTTTGGGGCCACCTTGAACTGCCAGTGAGTCAAGATAATGAAGAAGCGATATGTCAGGTCATCCGAAATG
CCTGCAAATCTGCCCTTGGTGCTTACCACACTACCATAGAAGAGGACGAAGAACTGTTGGGAAGTGAAAATCTTCAGCCA
AGGCTTCAAATTGCCGTTGAAGTCAGGGCCGGTGAGAAGAAAGTGCTACAGCAGATTGATGACATTTTCAAGCAGAGGGA
GGAGGAACTGGATGGCCTAGAGTACTACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6386.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis